Eocu000259.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:2390327-2391433[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 1.3e+03 0.9 0.0 22 44 5 27 2 34 0.87 2 10 4.8 3.2e+03 -0.4 0.0 23 44 62 83 58 87 0.87 3 10 0.19 1.3e+02 4.1 0.0 21 46 88 113 80 119 0.84 4 10 5.5e-05 0.037 15.4 0.1 21 52 116 147 112 149 0.88 5 10 0.01 7.1 8.1 0.1 21 46 144 169 140 175 0.86 6 10 0.018 12 7.4 0.0 21 51 172 202 168 205 0.85 7 10 1.1 7.1e+02 1.7 0.1 21 44 256 279 248 288 0.72 8 10 0.14 94 4.5 0.0 21 46 284 309 277 316 0.83 9 10 0.19 1.3e+02 4.1 0.1 22 44 313 335 308 339 0.88 10 10 0.018 12 7.4 0.1 20 48 339 367 334 368 0.85
Sequence Information
- Coding Sequence
- ATGAACACTGTAGAGAAACCTGACAAATGTGTACACTATGATGCAGCATTCTCACAATCGACATCCGTAAGGAAACACTCAAGGATCCACACCGGTGAAAACCCTTACAAAAATGTTGAATGCAATACAGTGTCCTCACATTTCACAAACTCAACACGTCGCATACTAACAAACACTGGCGGGAAACCATTTAgctgtgttgaatgtgataaaacattcagGCTATCCACACACTTGACAAAACATATGAGAACTCACACAGGCGAAAGACCATTCAAATGTGTCGACTGTGGTAATACATTCTTGCAATCTTCAAATTTATCAAcccacatgaggactcacactggtgagaaaccatacaaatgtgctgtgtgttataaaacattttcggaATCCTCAAACTTAATAaggcacatgaggattcactctggtgagaaaccatacatttgtgttgaatgtgataaagtaTTCAGACTATCCTCAGACTTGACAAGACATatgagaactcacactggtgagaaaccatataaatgtcctgactgttataaaacattttcagtatcATCAACCTTAATAACACACATGAGGATCCACTCTGGTGAAAAGccttacaaatgtgttgaatgtgataaaaagttCTTAGATTCCTCAAAGTTAGCATGtcacatgagaactcacactggcgagaaaccatacaaatgtgtagaaTGTAGCAAAGAATTCTCACTATCTGCACATTTGACACATCATATGAGAACCCACTCTGGTGAaagaccatacaaatgtgttgaatgttatAAAGCATTCTCATTAGCCTCGCACTTGGTGAAACACATGAGAACCCACACTGAGGAACGACCATTcaagtgtgttgagtgtgattATACATTCTCGCAATCCTCAAATTTAGCAACCCACATGAGAACCCATACTGGTgacaaaccttacaaatgtgtcgagtgcGGTAAAACATTTGCACAATCCTCAAACTTGGTAAGGCACACAAGAagtcacactggtgagaaaccatataaatgtgccaagtgtgataaaatattctcaacaTCCACAAAGTTAAAAAGACACATCACGCAAACTCACTTGTGA
- Protein Sequence
- MNTVEKPDKCVHYDAAFSQSTSVRKHSRIHTGENPYKNVECNTVSSHFTNSTRRILTNTGGKPFSCVECDKTFRLSTHLTKHMRTHTGERPFKCVDCGNTFLQSSNLSTHMRTHTGEKPYKCAVCYKTFSESSNLIRHMRIHSGEKPYICVECDKVFRLSSDLTRHMRTHTGEKPYKCPDCYKTFSVSSTLITHMRIHSGEKPYKCVECDKKFLDSSKLACHMRTHTGEKPYKCVECSKEFSLSAHLTHHMRTHSGERPYKCVECYKAFSLASHLVKHMRTHTEERPFKCVECDYTFSQSSNLATHMRTHTGDKPYKCVECGKTFAQSSNLVRHTRSHTGEKPYKCAKCDKIFSTSTKLKRHITQTHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678756;
- 90% Identity
- iTF_00678756;
- 80% Identity
- iTF_00678756;