Eocu000033.2
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067376.1:360974-363552[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.58 3.9e+02 2.5 0.0 21 45 6 30 2 37 0.86 2 12 0.26 1.8e+02 3.7 0.0 22 45 35 58 30 65 0.85 3 12 0.07 47 5.5 0.0 22 45 63 86 58 90 0.89 4 12 0.0032 2.2 9.8 0.0 21 52 90 121 87 122 0.89 5 12 0.12 81 4.7 0.0 22 44 119 141 116 145 0.89 6 12 0.0046 3.1 9.3 0.0 21 48 146 173 143 177 0.87 7 12 0.016 11 7.5 0.1 21 52 174 205 170 207 0.89 8 12 0.004 2.7 9.5 0.0 21 48 230 257 225 261 0.87 9 12 0.13 91 4.6 0.0 22 44 259 281 256 285 0.90 10 12 0.0043 2.9 9.4 0.0 21 52 286 317 282 319 0.94 11 12 1.4 9.2e+02 1.4 0.1 22 45 315 338 313 341 0.87 12 12 0.012 8.4 7.9 0.1 21 49 342 370 337 373 0.90
Sequence Information
- Coding Sequence
- atgagaactcacactggtgagaaaccatataaatgtgtagTGTGTGATAGAACATTCTCACAATTAGGAAACTTAACAATGCACATGAGAAATCACACTGGTGATAAACCTTTCCCATGTGTAGTGtgtaacaaaacattttcacaatcctCACACTTAACATCCCACTTGAGAAATCACACTGGTGATAAACCTTTTACatgtgtagtgtgtgataaaacattttcacaatcctATCACTTAACAACCCACATGAacactcacactggtgagaaaccatacacatgtgtagagtgtgataaaaACTTCTCACAATCATCAAACTTAACAaagcacatgagaattcacaatGGTGATAAACCTTTCACatgtgtagtgtgtgataaaacattttcacaatcctATCACTTAACAACCCACATGatgactcacactggtgagaaaccatacacatgtgtagtgtgtgataaaaACTTCTCACATTCATCAAACTTAACAaagcacatgagaattcacactggcgagaagccatacaaatgtgtacaATGTGATAAAGTATTCACTGATTCATCATCATTAAGCAGGCACATGAGATTACACACTGGttataaaccatacaaatgtgtagagtgtaAAAAAGATTTCTCATTTGACTCAGATTTAAGACGTCACATGatgactcacactggtgagaaaccatacacatgtgtagagtgtgataaaaACTTCTCACAATCATCAAACTTAACAaagcacatgagaattcacactggtgataaacctttcacatgtgtagtgtgtgataaaacattttcacaatcctGTCACTTAACAACCCACATGatgactcacactggtgagaaaccatacacaTGTGAAAAGTGTGGCAAAAACTTCTCACATTCATCAAACTTAACAaagcacatgagaattcacacatatgagaaaccatacaaatgtgttgactGTGATAAAGAATTCTCAGTTTCCTCAGCATTAAGACgtcacatgaggactcacaatGGTGAGAATCCATACACatgtgtagtgtgtgataaaaACTTCTCACATTCATCAACCTTAACAAAGCACTTGAGAATTCATACTTTTGGTGCACAAAATCAGTTGGTCCCAAGTTTATTCCACAACATAAAATGCCGAGAAGTTGTCCAGCCTGATTACTCCTCCAGTTCCATGCACAAGGCCAAGCAAGTGTCTCATGTGAGAGCAGCTTCAGTGTCGGTCCAGGTGCAGCAGCAGCGCCTCTTCATCCATCAGTTGAGACTCATGCGTCACCATAACAAGGCAGCGCTGTTTTGCAGTTGA
- Protein Sequence
- MRTHTGEKPYKCVVCDRTFSQLGNLTMHMRNHTGDKPFPCVVCNKTFSQSSHLTSHLRNHTGDKPFTCVVCDKTFSQSYHLTTHMNTHTGEKPYTCVECDKNFSQSSNLTKHMRIHNGDKPFTCVVCDKTFSQSYHLTTHMMTHTGEKPYTCVVCDKNFSHSSNLTKHMRIHTGEKPYKCVQCDKVFTDSSSLSRHMRLHTGYKPYKCVECKKDFSFDSDLRRHMMTHTGEKPYTCVECDKNFSQSSNLTKHMRIHTGDKPFTCVVCDKTFSQSCHLTTHMMTHTGEKPYTCEKCGKNFSHSSNLTKHMRIHTYEKPYKCVDCDKEFSVSSALRRHMRTHNGENPYTCVVCDKNFSHSSTLTKHLRIHTFGAQNQLVPSLFHNIKCREVVQPDYSSSSMHKAKQVSHVRAASVSVQVQQQRLFIHQLRLMRHHNKAALFCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678607; iTF_00678679;
- 90% Identity
- iTF_00678607; iTF_00678679;
- 80% Identity
- iTF_00678607;