Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0012 1.3 10.4 2.8 17 39 9 28 3 60 0.91

2 7 0.1 1.1e+02 4.2 0.1 17 39 65 84 59 90 0.86

3 7 0.19 2.1e+02 3.3 4.2 15 38 91 115 83 115 0.84

4 7 1.2 1.3e+03 0.8 0.8 18 41 122 142 120 147 0.64

5 7 0.08 89 4.5 3.0 6 41 139 170 134 172 0.78

6 7 0.0046 5.1 8.5 0.5 18 40 178 197 171 200 0.85

7 7 0.00097 1.1 10.7 5.4 14 43 202 228 194 229 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0012	1.3	10.4	2.8	17	39	9	28	3	60	0.91
2	7	0.1	1.1e+02	4.2	0.1	17	39	65	84	59	90	0.86
3	7	0.19	2.1e+02	3.3	4.2	15	38	91	115	83	115	0.84
4	7	1.2	1.3e+03	0.8	0.8	18	41	122	142	120	147	0.64
5	7	0.08	89	4.5	3.0	6	41	139	170	134	172	0.78
6	7	0.0046	5.1	8.5	0.5	18	40	178	197	171	200	0.85
7	7	0.00097	1.1	10.7	5.4	14	43	202	228	194	229	0.85

Coding Sequence: atgactcacactggtgagaaaccatacaaatgtgctgtgtgtgataaaacatttgcgGAATCCTCAAACTTAATAAGGCACATGATGATTCActctggtgagaaaccatacatttgtgttgaatgtgataaagtaTTCAGACTATCCTCAGACTTGACAAGACATatgagaactcacactggtgaaaaaccatacaaatgtgccgAGTGTGATAAAATGTTTGCACAATCATCAAACTTAATTGGGCACATGGGAATTCACACTGgcgagaaaccatacaaatgtgtagaaTGTAGCAAAGAATTCTCACTATCTGCACATTTGACACATCATATGAGAACCCACTCTGGTGAaagaccatacaaatgtgttgaatgttatAAAGCATTCTCATTAGCCTCGCACTTGGTGAAACACATGAGAACCCACACTGAGGAACGACCATTcaagtgtgttgagtgtgattATACATTCTCGCAATCCTCAAATTTAGCAACCCACATGAGAACCCATACTGGTgacaaaccttacaaatgtgtcgagtgcGGTAAAACATTTGCACAATCCTCAAACTTGGTAAGGCACACAAGAagtcacactggtgagaaaccatataaatgtgccaagtgtgataaaatattctcaacaTCCACAAAGTTAAAAAGACACATCACGCGAACTCACTTGTGA
Protein Sequence: MTHTGEKPYKCAVCDKTFAESSNLIRHMMIHSGEKPYICVECDKVFRLSSDLTRHMRTHTGEKPYKCAECDKMFAQSSNLIGHMGIHTGEKPYKCVECSKEFSLSAHLTHHMRTHSGERPYKCVECYKAFSLASHLVKHMRTHTEERPFKCVECDYTFSQSSNLATHMRTHTGDKPYKCVECGKTFAQSSNLVRHTRSHTGEKPYKCAKCDKIFSTSTKLKRHITRTHL

Sequence clustering based on sequence similarity using MMseqs2