Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0045 5 8.5 0.2 18 40 9 28 5 30 0.90

2 12 0.0077 8.6 7.8 0.5 17 40 36 56 28 59 0.84

3 12 0.00086 0.95 10.8 0.3 17 40 64 84 57 90 0.86

4 12 0.01 11 7.4 0.2 18 40 93 112 85 115 0.82

5 12 0.059 66 4.9 3.0 6 36 110 140 109 143 0.73

6 12 0.014 15 7.0 0.3 18 40 149 168 146 170 0.90

7 12 0.92 1e+03 1.1 3.3 1 40 161 196 161 199 0.81

8 12 0.0014 1.5 10.2 1.0 2 40 190 224 189 230 0.85

9 12 1.3 1.5e+03 0.6 0.9 17 40 232 252 225 255 0.72

10 12 0.0038 4.2 8.8 2.4 7 41 251 281 245 283 0.80

11 12 0.005 5.6 8.4 1.8 18 40 289 308 282 310 0.84

12 12 0.57 6.3e+02 1.8 0.2 18 29 317 328 312 338 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0045	5	8.5	0.2	18	40	9	28	5	30	0.90
2	12	0.0077	8.6	7.8	0.5	17	40	36	56	28	59	0.84
3	12	0.00086	0.95	10.8	0.3	17	40	64	84	57	90	0.86
4	12	0.01	11	7.4	0.2	18	40	93	112	85	115	0.82
5	12	0.059	66	4.9	3.0	6	36	110	140	109	143	0.73
6	12	0.014	15	7.0	0.3	18	40	149	168	146	170	0.90
7	12	0.92	1e+03	1.1	3.3	1	40	161	196	161	199	0.81
8	12	0.0014	1.5	10.2	1.0	2	40	190	224	189	230	0.85
9	12	1.3	1.5e+03	0.6	0.9	17	40	232	252	225	255	0.72
10	12	0.0038	4.2	8.8	2.4	7	41	251	281	245	283	0.80
11	12	0.005	5.6	8.4	1.8	18	40	289	308	282	310	0.84
12	12	0.57	6.3e+02	1.8	0.2	18	29	317	328	312	338	0.78

Coding Sequence: ATGTTTACTGGTGGGAAAccttacaaatgtgttgaatgtgataaaacattctctgAATCCTCAAAGTTAATTAGGCActtgaggattcacactggagagaaaccatacaaatgtgttgaatgtgatcgGACATTTTCAGAATCCTCGAACTTAACAaagcacatgaggattcacactggtgaaaaaccatacaaatgtgttgagtgtggtcAAACATTCTCGCGGTCCTCAAACTTCACAACACACATGAGGGTCCACACTGGTGCAACACCTTTCAAATGTGTTGTATGTGATAAAACTTTCTCACAATCCTCAGACTTAACAaagcacatgagaattcacactggtgagaaaccatacaaatgtgttgactGTGATAAGACATTCTCACGATCCTCACACTTAACAATGCACATGAAGATCCACACTGGtgtaaaaccatttaaatgtgttgaatgtgataaagcaTACTCAGAATCCTCAAGACTAAAAAAGCACATGAAAATTCATattggtgaaaaaccatacaaatgtgtcgagtgtaaCCAgacattttcagaattctcaAGAATAAAAAACCACATGAGAGTTCACACTGgcgaaaaaccatacaaatgtgatgAATGCGATAAAGCATTCTCTCAGTCCTCAAACTTAACCACGCATATGAGGATccacacaggtgaaaaaccattcaaatgtcTTGTATGTGATAAAAGATTCACACTATTCTCATTATTAACAAAGCACAtaaggactcacactggtgagaaaccattcaaatgcATTCAGTGTGATAAATCGTTCTCAGAGTCGTCGAAATTAACAAGGCACATGAGGagtcacactggtgaaaaaccattcaaatgtgttgaatgttatAATACATTCTCCGATTCCTCGTGCTTAAGAaggcacatgagaattcacggcggtgaaaaaccttacaaATGTGTTCAATGTAATGAAACATTCTCGCAGagcacaaaattaaatgaacataaaatgattcacttgtga
Protein Sequence: MFTGGKPYKCVECDKTFSESSKLIRHLRIHTGEKPYKCVECDRTFSESSNLTKHMRIHTGEKPYKCVECGQTFSRSSNFTTHMRVHTGATPFKCVVCDKTFSQSSDLTKHMRIHTGEKPYKCVDCDKTFSRSSHLTMHMKIHTGVKPFKCVECDKAYSESSRLKKHMKIHIGEKPYKCVECNQTFSEFSRIKNHMRVHTGEKPYKCDECDKAFSQSSNLTTHMRIHTGEKPFKCLVCDKRFTLFSLLTKHIRTHTGEKPFKCIQCDKSFSESSKLTRHMRSHTGEKPFKCVECYNTFSDSSCLRRHMRIHGGEKPYKCVQCNETFSQSTKLNEHKMIHL

Sequence clustering based on sequence similarity using MMseqs2