Emi013800.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000118.1:1268319-1273178[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.064 18 8.2 7.1 1 23 146 169 146 169 0.95 2 18 0.00025 0.07 15.8 0.9 1 23 178 201 178 201 0.96 3 18 0.027 7.7 9.4 0.4 2 23 214 236 214 236 0.97 4 18 0.00012 0.034 16.8 0.6 1 23 245 268 245 268 0.97 5 18 0.0038 1.1 12.1 3.1 1 23 280 303 280 303 0.96 6 18 4.2e-05 0.012 18.2 0.8 2 23 332 354 331 354 0.97 7 18 0.0012 0.33 13.7 1.2 2 23 364 386 363 386 0.96 8 18 0.082 23 7.9 1.8 3 20 392 409 390 411 0.91 9 18 0.00074 0.21 14.3 0.5 2 21 416 435 415 438 0.94 10 18 0.18 50 6.8 1.6 3 23 448 469 446 469 0.92 11 18 0.00066 0.19 14.4 3.5 1 23 474 497 474 497 0.94 12 18 0.00056 0.16 14.7 3.5 2 23 509 531 508 531 0.95 13 18 0.0012 0.33 13.6 2.9 1 23 555 578 555 579 0.94 14 18 0.41 1.1e+02 5.7 0.1 2 23 585 606 584 606 0.90 15 18 0.013 3.7 10.4 1.8 2 23 612 633 611 633 0.97 16 18 8.9 2.5e+03 1.5 2.2 3 23 641 663 639 663 0.88 17 18 0.0084 2.3 11.0 0.2 1 23 699 721 699 721 0.97 18 18 0.073 20 8.0 2.0 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATATAAAGCCAGAAATTAAAGTAGAAATAAAAGTGGAAAGAAAAGATCCTACCTCATTTTTGCCTGAGGAGCCGATGTCTTATGAAATTAAAAAAAAGAAGAAAAAGAAAAAAAAGAACATAGAGGACCCATTCAAAGATATAGATGACAAAATGGAGACCAAACCTGTGATTGAAATTATACCCGCTACTTTGGACCCTGAAGTTAATATAAAAGTTGAGAATATTGAAGTAGAATTGGATTTTAATGATTTCACCGACAACACTGGTCTCATGCTCGAGGGTCCGAACAGCGAGGACAGTCAAGAGCCAGCAATCAAAGTAGAAAACCAGAACCATGAAGCCGTCTTGCTCACCTTCGAAAGTGTCATCAACGAAAAGAAAATAAAAGCGTACCAGGAAGAACTAAGTGTCACGCCCAAACCAGAACACTTCTGTAAAGTTTGCCACCTAGTCTTCCAATCCACAAAGACGCTTAGAATGCACCAGAAAAGGAAACACAAGGTCTTCAGGAAGTCATTCAAACATATATGTGATTATTGTGGCATGTCGTATGAGATGAAGAATAGTTTAGTGGCTCACATTAAACGGAAACACGGACCGAATTCTTTGCCAGATGACAGGGAAGAAAGGACTTGTGAAATTTGTGCTCTAGTCTTCAAAGGAATGCCCAGATTACGGATGCATATGAGAAGGAAACATGGTTCTTTCCAGGAGTCCTTCCAACATGTCTGCCCAGACTGTGGTCTGACTTACGACAAGTACAGAAGCTTAATCGTCCATATACAACGGAAGCATTCGAATCAAACTAAACCAGAAATGAGTCAGTGGTACAATTGTATGTTTTGCTCTAAAATGTTTACTAAAAGGGAAACTTACGCAAGACATGTGCAAAGAAAACATCAAGTTAATGAAGACAGTATTAAAGAAGAAAACGCTGCAGAGCATGAGTTGGAAAGTTGTAAAAATGAACAAACAGGAGAAATCACTTGTAAGGAATGTCCTCTAGTCTTTTCGTCGCTAAATTTTTTGAAATTACATATGAGAAGGAAACATAATGCGTTGAGAGACGATTTTAGGTTGAAATGCAGGATTTGCAACTTGTCTTATGATAAGATTGAGAGTCTTAAACGTCACGTGAGGCGGAAACACGATAAAGGCTCGCATTGCGAAGTGTGCAATAAACAGTTTGATACTAGAGAAATGTATTTAAACCATTCACATACGAAGGTTATTAAAGAGTGCTCTATATGCGGGCTTATATTTGCGTCACAAGGTGGTTTGGCGAAACATTTGAGGTGTACACACAAAATAGATACGCCGAAAACGATTTTCTGCAACCTCTGCAACGAAGGATTCCATGATAAGCGACAGCTTAAACCGCATTTCATGAAAGTGCATTTAAAAGTTTCCTACACATGTAGATATTGTAAAAAGATTTTCAAAGCTAAGGAGAGTTATCGTCGCCATATTTTGTTCAAACATCCAACGTCAAACCATGTGAACACTCAGATGCAGAAATGCGAACATTGTACGGAGATGTTTAAAGACGAATTTGAGCTCTGCAAGCATATCAATTTGGTGCATGGTAAAACCAATGAGAGTTTGGCTAATATGATGGTAATAAAGAGAGAAGACGAAGACATTAAAAACACTTTCCAATGCACAAAGTGCCCGGAGATATACATAACATGGGAGCAGTTAAAATTGCACTACGAGCAATGCCATCATAACGTAGAACAGACTCAATGTCAGATATGCGGTGAGGTTTTACCGGGCAATGAGTTACAGAAGCACATTAAAGCGTTACACACAGACAATGAAATGCAATGCAAATACTGTGAGTTTAAGACTAACGTGAAATTAAGTTTAACACAACACATGTTGAGGCATAAGAATGCAGCAACGTTACATTGTGACTATACTGGTTGTAGATATAAGACGTTCTATGAAGGTGCTATGGAGAAACATAAAAGAAAGCATGCGGACCAAGGAGTCAAACTTCAGTGTACGCAGTGTCCGTTCCAAACGATGAATAAGTACATACTTAAATATCATGAGGAGGCTCATGAGACCGGCATCAAGCGGTATACTTGTGATCAGTGTGATTATGCAACGATACTGCCTGCCAATCTGGTACAGCATAAGTATAAACATTCTACAGAGAAACGGTTCAAATGTGATGTATGCCCTTTTGCAACAAAGTACAACACTTCGTTACGGTTTCACGTAAGAAAAAAACACTGTGATCTCCCGACATTCAGCTAA
- Protein Sequence
- MEDIKPEIKVEIKVERKDPTSFLPEEPMSYEIKKKKKKKKKNIEDPFKDIDDKMETKPVIEIIPATLDPEVNIKVENIEVELDFNDFTDNTGLMLEGPNSEDSQEPAIKVENQNHEAVLLTFESVINEKKIKAYQEELSVTPKPEHFCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPNSLPDDREERTCEICALVFKGMPRLRMHMRRKHGSFQESFQHVCPDCGLTYDKYRSLIVHIQRKHSNQTKPEMSQWYNCMFCSKMFTKRETYARHVQRKHQVNEDSIKEENAAEHELESCKNEQTGEITCKECPLVFSSLNFLKLHMRRKHNALRDDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHTKVIKECSICGLIFASQGGLAKHLRCTHKIDTPKTIFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHILFKHPTSNHVNTQMQKCEHCTEMFKDEFELCKHINLVHGKTNESLANMMVIKREDEDIKNTFQCTKCPEIYITWEQLKLHYEQCHHNVEQTQCQICGEVLPGNELQKHIKALHTDNEMQCKYCEFKTNVKLSLTQHMLRHKNAATLHCDYTGCRYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGIKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932998;
- 90% Identity
- iTF_00281659;
- 80% Identity
- -