Cnup040968.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776099.1:3633278-3639576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.043 7.5 9.0 7.1 1 23 145 168 145 168 0.95 2 18 0.00023 0.04 16.1 0.8 1 23 177 200 177 200 0.96 3 18 0.014 2.5 10.5 0.4 2 23 213 235 213 235 0.97 4 18 0.0012 0.21 13.9 1.3 1 23 244 267 244 267 0.96 5 18 0.0012 0.21 13.9 2.2 1 23 279 302 279 302 0.96 6 18 0.00014 0.025 16.8 0.7 2 23 331 353 330 353 0.97 7 18 0.0014 0.24 13.7 1.2 2 23 363 385 362 385 0.96 8 18 0.097 17 7.9 1.8 3 20 391 408 389 410 0.91 9 18 0.00088 0.15 14.3 0.5 2 21 415 434 414 437 0.94 10 18 0.21 37 6.8 1.6 3 23 447 468 445 468 0.92 11 18 0.0014 0.24 13.7 3.7 1 23 473 496 473 496 0.94 12 18 0.00036 0.062 15.5 3.7 2 23 508 530 507 530 0.95 13 18 0.0014 0.25 13.6 2.9 1 23 554 577 554 578 0.94 14 18 0.32 56 6.2 0.1 2 23 584 605 583 605 0.92 15 18 0.0061 1.1 11.6 1.5 2 23 611 632 610 632 0.97 16 18 5 8.8e+02 2.5 2.0 3 23 640 662 638 662 0.88 17 18 0.019 3.4 10.1 0.1 1 23 698 720 698 720 0.97 18 18 0.087 15 8.0 2.0 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAAGAGaaataaaagtagaaataaaaatcGAAAGAAAAGATCCTACCTCATTTTTGCCTGAGGAGCCAATgtcttatgaaataaaaaaaaagaaaaagaagaaaaaaaagctGCAAGAGGATCCATTTAAAGATATTGATGATGAAATGGAGGTTAAGCCGGTGGTGGCGGGGTATGTGCCGGCTGCTTTGGATACTGAAGTCAATATAAAAGTTGAGAACATTGAAGTTGAATTGGATTTTAATGATTTTACTGACAACACTGGTCTCATGGTCGAAGGTCCACACAGCGAAGACAGCGAAGAGCCTGCAgtgaaaatagaaaatcagaACCGCGAAGCCGTCCTGCTCACATTCGAGAGCGTCATCAACGAAAAGAAACTTAAAACCTATCAGGAAGAACTAGGTGTCACACCAAAGGCTGAACATTTCTGCAAAATTTGTCACTTAGTGTTCCAATCAACGAAAACTTTACGAATGCATCAGAAAAGAAAACACAAGATATTCAGAAAGTCATTCAAACATATATGCGATTATTGCGGCATGTCCTACGAAATGAAGAATAGTTTAGCAGCACATATTAAGCGGAAGCATGGACCGAATTCTTTACCAGATGATCGAGAAGAAAGGACTTGTGACATTTGTGCTCTAGTCTTCAAAGGCATGGCCCGGTTAAGGATGCATATGAGAAGGAAACATGGGTCGTTCCAGGATGCCTTTCAACATGTCTGCAAAGACTGCGGTCTTACTTATGATAAGTACAGAAGTTTGATAGTACATGTACAACGAAAACATTCTAATCAGACGAAGCCAGAAATTAGTCAGTGGTACAACTGCATGTTTTGTCCTAAGATGTTTACTAAAAGGGAAACTTATGCAAGACATGTGCAGAGAAAACACCAGGTGTCGGAAGACAGTATTAAGCAAGAAAATGCTCAGGGATATGACTTAGAAAGTTGTAAGAACGAGCAAACTGGCGAAATAACTTGCAAGGAATGTCCTCTAGTCTTTTCCTCGataaatttcttaaaactgCATATGAGAAGGAAACATAATGCGTTGAGAGACGATTTTAGATTGAAGTGTCGGATTTGTAACTTGTCTTACGATAAGATTGAGAGTCTTAAGCGCCATGTGAGACGGAAACATGACAAAGGATCGCATTGCGAAGTGtgtaataaacaatttgataCAAGGGAAATGTATCTGAACCACTCCCATACAAAAGTCATAAAGGAATGCTCGATTTGTGGTCTCATATTTGCTTCTCAAGGCGGTTTGGCGAAACATTTAAGATGTACACACAAAATAGATACGCCGAAGACTATTTTCTGTAACCTTTGCAACGAAGGGTTCCATGATAAGCGTCAACTGAAACCACATTTCATGAAAGTGCATTTAAAAGTTTCTTACACATGTAGATTTTGCAAGAAGGTTTTTAAAGCGAAGGAGAGTTACCGTCGTCATATACTGTTCAAGCATCCAACTTCAAATTATGTAAGCACACAGTTGCAAAAATGTGAGCATTGTACGGAGACATTCAAGGATGAATTTGAGCTTTGTAAGCATATAAACTTAGCACACGGTCAGTCAGATGAGAGTATGTCTAATATGATGGTTATAAAGAAAGAGGATGAGGACATTAAAAATACTTTCCAGTGCACAAAGTGTCCAGAGATTTATATAACATGGGAGCAATTAAAATTGCACTATGAACAATGTCATCATAACGTTGAACAGACACAATGTCAGATATGCGGTGAGGTGCTACCGGGGAATGAATTACAAAAGCATATAAAAAATCTACACACGGACACAGAAATGCAATGCAAGTACTGTGAGTTTAAAACTAACGTGAAAATAAGTTTAACACAACATATGTTGAGGCATAAGAATGCTGCAACGTTACACTGTGACTATTCAGGTTGCAgatataaaactttttatgAAGGTGCTATGGAGAAACATAGAAGGAAGCATGCGGATCAGGGAGTCAAACTCCAGTGTACGCAGTGTCCGTTCCAAACTATGAATAAGTACATACTAAAGTATCATGAAGAAGCTCATGAGACAGGTGTTAAGAGATATATGTGTGATCAATGTGATTATGCTACAATACTGCCAGCTAATTTGGTCCAGCATAAGTACAAGCATTCAACTGAGAAACGGTTTAAATGTGATGTATGCCCTTTTGCTACTAAGTACAATACATCGTTACGATTTCATGTAAGGAAAAAGCACTGTGATCTCCCAACATTCAgctaa
- Protein Sequence
- MEEREIKVEIKIERKDPTSFLPEEPMSYEIKKKKKKKKKLQEDPFKDIDDEMEVKPVVAGYVPAALDTEVNIKVENIEVELDFNDFTDNTGLMVEGPHSEDSEEPAVKIENQNREAVLLTFESVINEKKLKTYQEELGVTPKAEHFCKICHLVFQSTKTLRMHQKRKHKIFRKSFKHICDYCGMSYEMKNSLAAHIKRKHGPNSLPDDREERTCDICALVFKGMARLRMHMRRKHGSFQDAFQHVCKDCGLTYDKYRSLIVHVQRKHSNQTKPEISQWYNCMFCPKMFTKRETYARHVQRKHQVSEDSIKQENAQGYDLESCKNEQTGEITCKECPLVFSSINFLKLHMRRKHNALRDDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHTKVIKECSICGLIFASQGGLAKHLRCTHKIDTPKTIFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRFCKKVFKAKESYRRHILFKHPTSNYVSTQLQKCEHCTETFKDEFELCKHINLAHGQSDESMSNMMVIKKEDEDIKNTFQCTKCPEIYITWEQLKLHYEQCHHNVEQTQCQICGEVLPGNELQKHIKNLHTDTEMQCKYCEFKTNVKISLTQHMLRHKNAATLHCDYSGCRYKTFYEGAMEKHRRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGVKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932998;
- 90% Identity
- iTF_00282692; iTF_00677928;
- 80% Identity
- -