Epri071568.1
Basic Information
- Insect
- Euceroptres primus
- Gene Symbol
- -
- Assembly
- GCA_037177015.1
- Location
- JBAGKK010333502.1:10211-11320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.035 12 8.8 0.3 1 23 85 107 85 107 0.92 2 10 1.5e-06 0.00053 22.5 1.7 1 23 113 135 113 135 0.98 3 10 3.5e-07 0.00012 24.5 0.5 1 23 141 163 141 163 0.98 4 10 0.00017 0.059 16.0 0.8 2 23 170 192 170 192 0.96 5 10 5e-07 0.00017 24.0 4.5 1 23 197 219 197 219 0.97 6 10 4.4e-06 0.0015 21.0 1.8 1 23 228 250 228 250 0.98 7 10 2.1e-06 0.00071 22.1 0.9 1 23 256 278 256 278 0.97 8 10 2.3e-05 0.0079 18.8 1.3 2 23 285 306 284 306 0.97 9 10 1.1e-06 0.00038 22.9 3.5 1 23 312 334 312 334 0.98 10 10 1.6e-06 0.00054 22.4 0.5 1 23 340 362 340 362 0.98
Sequence Information
- Coding Sequence
- ATGATTGCAAATATGTTGGACGAAAACTTGCACCATTCCAAACAGGATTACGAGGAACCACTGGATAATAATAACAGATTGGACAATGATCTTGAATTTAAATCCTGGTCCGAAAGCCTAAACGCTGAAACTGACCTGAAACTGCTGATCAGAAATAAGGATTTGGAAATGTCCTTGTGTGCAAACGATTCTAGAGTGCAAGTTAGTGCCAAAACTAAAGAAGAGGGAAGCTACgactctgaaaaaaatctctacCAGTGCACTATTTGTATGAAGGAATTCAAAGCTAAGAACCTTTTCGAAGGGCATTTGGTGGCACACAGCGATATTCGTCCATTCGAATGTGAAGTCTGTGGCAAACACTTCAAACGTACAAATACTCTTGCAGTCCATAGGCGAATTCACACAAGAGAACGTAATTTTATCTGCGATGTTTGTGGCAGAGCTTTTGTCCAAGCTTCTCAACTAGCCACTCATCACAGAAGACACTTCGAGAAGTACACCAGGTACTGTGAAGTTTGCAACAAAGGTTTCTTCACAAATGCTGAACTCCATGGTCACATGAACGTCAAGCATGGTGCCAAGGAGCACGTTTGTCACGAATGTGGCAAGTCTTTTCCAAATAATCACACCCTGGTTCGTCATTTGAAGATTCATGATCCAAACTTCAAACCTGTTAAGCATCAGTGTGAATTTTGTGGGAAGACCTTCGCTTACAAAAATTCTCTGGTGGTTCACGTCAAGTCTCACACTGGAGAAAATAAATACGACTGCCATCTTTGTGGTAAATCTGTTTCTTCCAGAGGATCTCTTCAGGATCATCTACGACTTCATGGAGGAGAAAAGTCCCTAGTGTGCGACGTTTGCGGAAAGGCATTTCATAAAAGGACTACTTTAGTGGTGCACAAAAGGACGCACACTGGAGAGAAACCATATACCTGTGATACTTGTGGAAAATCTTTCACACAGCATTCTACCTTAGTTATTCATAAGCGATACCACACTGGCCAGAGGCCTTATCAGTGCAGTCTTTGTAATAAGTCCTTTGTCTCGAGAGCTTTACTCAATGCTCACAGCAAAGTTCATGTTGTAAACGTTATGGTTATATAA
- Protein Sequence
- MIANMLDENLHHSKQDYEEPLDNNNRLDNDLEFKSWSESLNAETDLKLLIRNKDLEMSLCANDSRVQVSAKTKEEGSYDSEKNLYQCTICMKEFKAKNLFEGHLVAHSDIRPFECEVCGKHFKRTNTLAVHRRIHTRERNFICDVCGRAFVQASQLATHHRRHFEKYTRYCEVCNKGFFTNAELHGHMNVKHGAKEHVCHECGKSFPNNHTLVRHLKIHDPNFKPVKHQCEFCGKTFAYKNSLVVHVKSHTGENKYDCHLCGKSVSSRGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYQCSLCNKSFVSRALLNAHSKVHVVNVMVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00461026; iTF_00129185; iTF_00128423; iTF_00129931; iTF_00126158; iTF_00126912; iTF_00841288; iTF_00011377; iTF_01390529; iTF_01394563; iTF_01393732; iTF_01392965; iTF_00980358; iTF_01391402; iTF_00089810; iTF_01389660;
- 90% Identity
- -
- 80% Identity
- -