Dros019408.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000484.1:6451504-6452908[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.065 19 7.8 0.4 1 23 95 117 95 117 0.92 2 10 1.5e-06 0.00044 22.3 1.3 1 23 123 145 123 145 0.99 3 10 1.8e-07 5.3e-05 25.2 0.4 1 23 151 173 151 173 0.98 4 10 0.00024 0.068 15.5 0.8 2 23 180 202 180 202 0.96 5 10 5.2e-05 0.015 17.5 4.4 1 23 207 229 207 229 0.97 6 10 3.6e-06 0.001 21.2 1.2 1 23 238 260 238 260 0.98 7 10 2.3e-06 0.00066 21.8 0.3 1 23 266 288 266 288 0.97 8 10 2.1e-05 0.0062 18.7 1.3 2 23 295 316 294 316 0.97 9 10 1e-06 0.00029 22.9 3.5 1 23 322 344 322 344 0.98 10 10 1.8e-06 0.00051 22.1 0.5 1 23 350 372 350 372 0.98
Sequence Information
- Coding Sequence
- aTGATTTATTGTAAATTTAAGGTAAAATTGAGATGGGACCATATCATTGAAAATGTATTGGATGAAAACTTGCTAGCGTCCAAGCAGGATTATCAGGAATCTCtggataataataataaatcgtTGGACAGTGATCTTGAATGTAAATCCTGGTCTGAAGAAACTCGTCTGAAATCGATAATTAGAAATAAGGGTTCGGAAGTTTCAGTCTCTATGAACAACTCCTCACTCAAAGAGCAAGTTAATAAAACCATAGAGGAATCTCaatccgaaaaaaatatataccgGTGCAGTATTTGTATGAAACAATTCAAAGCTAAGAATTTATTTGAAGGACACTTGGTGGCTCACAGCAACGATCGTCCATTCAAATGTGAAATCTGTGGTAAATACTTCAAACGTACAAATACTCTCGCAGTTCATAAAAGAATTCATACTCGAGAGCGAAACTTTGTCTGCGATGTTTGTGGAAGAGCATTCGTTCAAGCTTCTCAACTAGCCACTCATCACAGAAGACACTTCGAGAAATACACCAGGTACTGTGAAATATGCAGTAAAGGTTTCTTCACGAATGCTGAACTTCATGGTCATATGAATGTTAAACATGGTGCGAAGGAACACGTCTGTCATGCCTGTGGCAAGTCTTTTCCAAACAACCATACCCTGGTTCGTCACTCAAAGATACATGACCCAAACTACAAACCTATCAAGCATCAGTGtgaattttgtggaaaagtcttTGCGTACAAAAATTCTCTAGTGGTTCACGTCAAATCTCACACAGGAGAAAATAAGTATGACTGCCAACTTTGTGGTAAGTCTGTTTCTTCCAAAGGATCTCTACAGGATCATCTGCGACTACATGGAGGAGAAAAGTCCCTTGTGTGCGATGTATGTGGCAAGGCCTTTCATAAAAGGACTACTTTAGTGGTTCATAAAAGGACACATACTGGAGAGAAACCATATACCTGTGATACTTGTGGAAAATCTTTCACTCAACATTCTACTTTAGTTATTCATAAGCGATATCATACCGGCCAGAGGCCTTATCAGTGCAGTCTTTGCAACAAGTCTTTCGTGTCTAGAGCTTTACTCAATGCTCACAATAAAGTACATGTTGTAAACTTCATGATTATATAG
- Protein Sequence
- MIYCKFKVKLRWDHIIENVLDENLLASKQDYQESLDNNNKSLDSDLECKSWSEETRLKSIIRNKGSEVSVSMNNSSLKEQVNKTIEESQSEKNIYRCSICMKQFKAKNLFEGHLVAHSNDRPFKCEICGKYFKRTNTLAVHKRIHTRERNFVCDVCGRAFVQASQLATHHRRHFEKYTRYCEICSKGFFTNAELHGHMNVKHGAKEHVCHACGKSFPNNHTLVRHSKIHDPNYKPIKHQCEFCGKVFAYKNSLVVHVKSHTGENKYDCQLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYQCSLCNKSFVSRALLNAHNKVHVVNFMII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676980;
- 90% Identity
- -
- 80% Identity
- -