Epru008900.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- prdm10
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000005.1:19445554-19449889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00089 0.11 13.7 0.1 2 23 524 545 523 545 0.96 2 11 0.012 1.5 10.2 1.0 2 23 558 579 557 579 0.96 3 11 0.0095 1.2 10.5 3.8 1 23 596 618 596 618 0.91 4 11 0.0062 0.78 11.1 2.6 2 23 627 648 626 648 0.96 5 11 0.00012 0.016 16.4 0.5 1 23 655 677 655 677 0.98 6 11 0.0007 0.088 14.1 1.8 1 23 684 706 684 707 0.95 7 11 0.00041 0.052 14.8 1.7 1 23 712 734 712 734 0.98 8 11 2.5e-05 0.0031 18.6 4.1 1 23 740 763 740 763 0.96 9 11 0.0018 0.22 12.8 1.7 1 23 796 819 796 819 0.97 10 11 3.9e-05 0.0049 18.0 2.4 1 23 841 864 841 864 0.97 11 11 0.004 0.5 11.7 3.4 3 23 902 923 902 923 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCTAACTCCTTTGAGATACCTAATATCGATAAAGTATCTGACACTTCGGTAAATTGGCCCACAGATCATTCGCTTTCCTCATCGATGTGCGAGCAACCcaaaaaaatgaataacaataaattattatttctaagCATTGTGGAGTACGTGGAGGATCAATCGCGGGAGTATTCTCGTTTATTCCCGACCTACGAACAGGTCTCTTTTTCCCCCAGAGCCACGTCTCCTCTTTCTGACTTTGAGCACAGAGTCAGTCCCCTTGACCCCAATATGAGTTCTGCTGCCAGATATTCGCCTACTCCGGTTCAACTTCCTCCATCTCCGTTTCACAATTCTGTTGTTGTGCTCCAAGGGTCTTCCTCTCCTCTGATATCCTCCTCTGAGTCCAGCGAAAGAGCAAACGTTAATTATGTCTCTCAGTTAACTCATCCGATCGATGCTCAAAGTGTACAGCAGGCGGATAATTCTGGGGACTTTGTTGCCAATGAAAATGAGGAGCAGTTGGTGTCTAGCGTTGGTAGCGAACTGATTCTGATGCAAGAATCCAATTCTGGATTAGAATCAGCAACAGCTCCCTTGATGCTAGCAGGAATGCCGAGTACGGATTTCGCGTTGAGCAGAGATTTTCTTGTTATGCAAGACGACCAAATGAACGTTATAAATTCGTTTAAAACGCAGAATCTCGACGTGGATGATTCTACTCATCTCTCGTCGGCTGCGGAAAATTCGAACAAAGAGAATAGCGCGGAACCGTTGCCCGCGTCTAACGCGagagaaatgaatgaaattttattgccTACCGAAGACAAGAAAGATTGCGAGAAACAAATTGTTAGACGCTCGAAGCGTCGCATAAACGATAAAAAgaatttatGCTGTGACGAATGCGATGATGCGTGCACTGGTGATACGTGCACTTCGCATAACGTATGTACAATAGCGGATCAACCGGTACCGTCGCGTGCTATAGCAACACTGCCAGGATCGTATctttctataaataaattatccaaCTCTGAAATTGCATTGGGCGGATCGGATTATGGGGTGTTTGCGAAACGTTACATACAAAAGCGTACACAATTCGGCCCCATAGAGGGTATTTTGTATCCCTATGACGGCACGCCGTTCAAAAATGAATTGCCGTTGCTCTTTGAAACTGAGAACAAGGAGTTTCTAAAAGTAGACGTTTCGAACGAAAATGCTTCGAATTGGATGCGCTTCGTTAGACCCGCGTTGACGTACAAAGATCAAAATTTGGTAATTTGCCAGCAACGCGACGGAATAGTATTTTTAACTACGAAAAGCATTTTACCAAAGGAAGAGTTAAGGGCTGGCCCTAGTACCGATTACGCGATTCGTAGGAATTTAATTCCGCTGAAATCTGTACAGGAATCAAAAGATGACAAAGAGCACAAAAATCAATTGTCTACTTGGTCGCGATTAGACGACAATCACTCCCGTCGCATGAAAGTATTTCGCGGTAGAAAtctgaaagagaaagagaattcGAGGCAGAATAATACCAAGGAGTGGAAATGTTCTGTTTGCGGTTTGATGTTTAGAAAACCGCTTCTGCTTAATTTGCACACTCTCGTTCACGGCACCGATAAAGTAAAAACTAAGATTCAGTCGACGGTTTGCCCCCAATGTGGACTGCAGTGCCAGAAGCAAAAAGAATTGATCAGTCATATTTCGCAGCACGGGAGGTTGTCTTTAAAGAAAGCGAAAAGATTGACTTCTCTTTCCACGTATAAGTGTTCCATGTGCTACAAACGTTTCGCGACGAAAGTGCGACTGCAACAGCACTGCTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATGCAATATTTGCTTCAAACGATTCATGAACAATTCAGCGCTCTCTTGTCATTTAAAAACGCACAGAGAGAACAAGCAAGTATTCGAGTGTCCAATGTGCAGGCAGCTGTTCAGTCAAAGCATGACGTTAAAGGATCACATTGAAACTCACAAGAAGGAAGATGGCACGTTTAGCTGTCCATACTGccaaagaatatttattaaatactcgGTTATTCGTAAACATATTAGAGCGCATCATTGCGAGAGGAAACACAAATGTCAAATTTGCGCAAAACGATTTGCCACGGTGGATAAATTGCAGATGCATCTATTAAAACATTCCGATCATAGAGAATTTCATTGCGCGAACTGCGGTAAACAATTCAAAAGAAAAGACAAGTTAAAGGAGCACATGACTAAATTGCACAACTCGCAAACGGCAACCGAGGAACAAATGTCGCAAGTTACGCAGACCAAAAAGTTCGTTCCGAAGGTGAATCCTAACGACTACAATCGATTCATTTACAAATGCCATCAATGTCTAGTCGGCTTTAAACGAAGGGGAATGCTCGTGAATCATCTGGCGAAGCGTCATCCAGACGTTGCCCCCGAATCTGTGCCGGAATTAAATTTGCCAATCTTACGTCAGACGAGAGATTATTACTGTCAATATTGCGATAAGGTCTACAAGAGCAGCAGTAAACGTAAAGCGCACATCATGAAAAATCATCCGGGAGCCGCTTTGCCACCCAGCAACAGACAGAAGGAATCGGATTACTCCGATTTGCCGAATCCAACGTTTAGCCAAACAGTGGGTAGCATTACGACTACTCCTCAAGGTTGTCAATGGTGTCACAAGCAGTACGCTAGCAAGGCAAAACTTTTGCAACATCAAAGAAAAAAGCACTCTAGTTTAATGGAACCGGCTGATCAGATACCACGTTCGCGTAATCGGCAGCCGCAAAATCAAAATCAGCCACCGGTTCTTATCGAGGATCACTTCGTGTTGTCCGATTACATACAAGCGTGCGAAACGAATTCCGATTTTTTTAAGCCAAGGATAATCAAAATATCCGACGACGTTGATCTGATAAGCAACGGTTTAGAGATAGTTGGGCAACAATTTGTTCGTATGCGTGACATACGCTGA
- Protein Sequence
- MDPRGPPEGAPANSFEIPNIDKVSDTSVNWPTDHSLSSSMCEQPKKMNNNKLLFLSIVEYVEDQSREYSRLFPTYEQVSFSPRATSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGSSSPLISSSESSERANVNYVSQLTHPIDAQSVQQADNSGDFVANENEEQLVSSVGSELILMQESNSGLESATAPLMLAGMPSTDFALSRDFLVMQDDQMNVINSFKTQNLDVDDSTHLSSAAENSNKENSAEPLPASNAREMNEILLPTEDKKDCEKQIVRRSKRRINDKKNLCCDECDDACTGDTCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSNSEIALGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGTPFKNELPLLFETENKEFLKVDVSNENASNWMRFVRPALTYKDQNLVICQQRDGIVFLTTKSILPKEELRAGPSTDYAIRRNLIPLKSVQESKDDKEHKNQLSTWSRLDDNHSRRMKVFRGRNLKEKENSRQNNTKEWKCSVCGLMFRKPLLLNLHTLVHGTDKVKTKIQSTVCPQCGLQCQKQKELISHISQHGRLSLKKAKRLTSLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKQVFECPMCRQLFSQSMTLKDHIETHKKEDGTFSCPYCQRIFIKYSVIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQMSQVTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADQIPRSRNRQPQNQNQPPVLIEDHFVLSDYIQACETNSDFFKPRIIKISDDVDLISNGLEIVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00983779;
- 80% Identity
- -