Epru026113.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- Hr39
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000022.1:1335510-1338622[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3 1e+04 -3.7 6.0 132 156 39 62 18 95 0.46 2 5 1.9 1.5e+04 -4.2 9.2 74 164 239 328 185 361 0.55 3 5 1.8 1.4e+04 -4.1 11.1 63 163 355 454 328 468 0.60 4 5 4.2e-08 0.00033 21.0 0.0 1 23 533 555 533 570 0.90 5 5 5.8e-71 4.6e-67 228.0 0.2 87 408 590 894 558 894 0.81
Sequence Information
- Coding Sequence
- ATGTCGGATCAAAACGGGCCGGGCGAGGGTCCCGGGCCCGGTTCAGGATGGTGGCCGACGTCCTCGCCGTCCTGGAAGTCGTCCACCACCCCCGCAACCTCCGCATCCGACGCATCTTCGCCTCTGTCAACCTCCGTCGCCTCGACCACGAccacgtcgtcgtcgtcgtcgtcgaccaCCTCTCGGTCCTCTGAAACGGGAGGGAAAAACGTCTCCGTGACAACGATAAACGCGGCCCCGGCCCAAGAGATGCATTCGAAAGGGATTTGCAAGTACCTAACCGGTCAAAACGGCGTCACAGTGTCCGTAGTTTCGAGTTGCGACTCTGCTGTTTTAGAGCGCGCGCAAACCGCGGTGGAAGAGGACGGGGAGGATAGTAGCGACGTGGAGATAAGCAAAATCGACTTTCGCGGTGTGAATCTTCGCACGAAAAAGAAAGCAGAAGCGGAGCAAGATGATTACGAAGGCGTTGAAGCGACGCAACGTCAACCGGAGAGGCCGATGTCGTGGGAGGGGGAATTATCCGACCAAGAAATGTCCTCCAACACGATAACGAATCAAGAGGCTCACGAAGATGCTTCTATGGAAGGTGTGCAAGTCTGCGGGGCGAGTCCAGGGCCGTTAGAGCAAAAGTTCCCACCAGTGAAACCGGAGCCAGATTTCAGGTCCAGCTCCGGATTCGCGTTCTCTTCGTTTCAGGACTCGAATTTGCCCCTGCCGCAGTTGCAACAGCAGCAGCCGCAGCAGCAGCGTCAAAACGTGGAAAGCTTGGAGCAAACACAGCAGAACGATTTACCATTGCTCGTTGGCAAGTTGTTAGGCGGTTACAATAACTCGACACCGAATCACAGTCCCGTTTTGAATCCCAGACACCATCTGACCAAGCACAGTCACACCAGATCGCAAGTCCCGTCACCGGATTCGGCGATTCACTCGGCTTACAGCGTTTTCAGCTCGCCGACTCAAAGTCCGCACGCGGCCAGGCACTCGGCACTTGGAGCGGCTAGTCCCGTGCCTTCTTCGTCGCTCTCGCTCTCCAGACACAGCTTCAACAACTCCACGTcttcgttgtcgttgtcgttgtcgcaCTCGTTGTCCAGGAACAATTCGGACGCCTCCAGCAGCTGTTACAGCTACGGATCTCTGAGCCCGCCCACGCATTCGCCGGTGCAGCAGCCGAGACATCCGCAGCACCACCAAGTCGCCCAAGGTAGCCCTCTGCATCTGCCGGCGACTTCGAACGCGATTCAACAGCATCACTATTCGTCGTCCACCGCACCTGCAACCGAATTATCCCCCGAGGGACACGTGCAAGACGAGCAGGAAGATTGTAGAATCGCGTCCGCACCGTCGGGCATTTCAACGAGGCAGCAATTGATCAATAGCCCGTGTCCGATTTGCGGCGACAAGATCAGCGGATTTCATTACGGCATTTTCTCCTGCGAGAGTTGTAAAGGATTCTTCAAACGCACCGTCCAGAATAGGAAGAATTATGTGTGCCTTAGAGGCGCCGGATGTCCGGTCACCGTTGCCACCAGGAAAAAGTGTCCCGCTTGCCGATTCGATAAATGTCTCAATATGGGCATGAAATTAGAAGCGATTCGCGAGGATCGCACCAGAGGTGGCCGAAGTACGTACCAGTGCACTTATACTCTTCCCGCGAGTCTCGTTGGAAGTCCAGCGAACACGATACCAGCTGAGAAACTGTCAACCGGAGGGAACTGCAGTCCGGCTCCGTCGGGAACCGATCACTATTACACCGTGCGCCATCACTCGAATCACTCGCACAAGATACAAGTCGTCCCGCAATTGTTGCAAGACATAATGGACGTGGAGCACCTGTGGCACTACAACGACAACGATCGGATGTCGGGAGCAGCGCAGTCCGGGCCAAACTTGACGCGAAACAGCGACGCGAGCTCGGTCCCGGCGAACGACGTCACCACGTCGAACGTGGACAGTAGTCCGTTGAACGGTAGCTCGGGAAACGGGAATTCGACTAATCGACGGGAGGACAGACCTAACGCGTCGACGAGTTTGGGTAACGAGCAGCTGGCTGCGACGAACAACAACGTGAATCCAACGCAGCATCCCGATTTCCTCTCCAATCTCTGCAACATAGCCGATCATCGGCTGTACAAGATCGTGAAATGGTGCAAAAGTCTGCCATTATTCAAGAACATCTCGATAGACGATCAAATCTGCCTGTTAATCAATTCCTGGTGCGAGTTGTTGCTGTTCTCTTGTTGCTTTCGGAGCATGGGCACTCCGGGGGAGATCCGAGTGTCTCTGGGCAAGTCGATTACCCTGGAGCAAGCTAGGCAGCTCGGGTTGGCGACTTGCATCGAGAGGATGCTCGCGTTCACGAATAATCTGAGGCGGCTCCGAGTGGATCAGTACGAGTACGTCGCTATGAAGGTGATAGTGTTGCTGACGTCGGATACGAGCGAGTTGAAGGAGCCGGAGAAGGTGAGAGCGTCCCAGGAGAAGGCTTTGCAGGCGTTGCAGCAATATACGATTGCAAGGTATCCGGAGATGCCGGCCAAGTTCGGTGAATTGCTGCTGAGAATTCCGGATCTGCAAAGGACTTGCCAGGCGGGCAAGGAGTTGTTGAGCGCGAAACGCGCCGAGGGCGAGGGCAGCTCGTTTAATTTGCTGATGGAACTGCTTAGAGGCGATCACTGA
- Protein Sequence
- MSDQNGPGEGPGPGSGWWPTSSPSWKSSTTPATSASDASSPLSTSVASTTTTSSSSSSTTSRSSETGGKNVSVTTINAAPAQEMHSKGICKYLTGQNGVTVSVVSSCDSAVLERAQTAVEEDGEDSSDVEISKIDFRGVNLRTKKKAEAEQDDYEGVEATQRQPERPMSWEGELSDQEMSSNTITNQEAHEDASMEGVQVCGASPGPLEQKFPPVKPEPDFRSSSGFAFSSFQDSNLPLPQLQQQQPQQQRQNVESLEQTQQNDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQVAQGSPLHLPATSNAIQQHHYSSSTAPATELSPEGHVQDEQEDCRIASAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPANTIPAEKLSTGGNCSPAPSGTDHYYTVRHHSNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRMSGAAQSGPNLTRNSDASSVPANDVTTSNVDSSPLNGSSGNGNSTNRREDRPNASTSLGNEQLAATNNNVNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMGTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676051;
- 90% Identity
- iTF_00676051;
- 80% Identity
- iTF_00676051;