Espl033669.1
Basic Information
- Insect
- Eubasilissa splendida
- Gene Symbol
- Prdm9
- Assembly
- GCA_031772225.1
- Location
- CM062872.1:5303522-5312656[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.092 3.4e+03 -0.7 0.1 26 43 380 397 374 402 0.85 2 5 0.00045 17 6.7 0.0 21 43 403 425 399 430 0.91 3 5 0.00047 18 6.6 0.0 21 43 431 453 428 458 0.91 4 5 0.00038 14 6.9 0.0 21 43 459 481 455 486 0.91 5 5 0.0059 2.2e+02 3.1 0.0 21 44 487 510 482 519 0.84
Sequence Information
- Coding Sequence
- ATGGATGATCCCGAGCGAATGGACGTCAGCGGCTTCTGGACCAAGTCCGAATGGAAGAAGCTGACTGCTGAGCAGAAGCACTTGTCAAAGTGCATGTATGTAGACTACATGAGAGGAGTAATTCCAAAACCAATAATCATCCAGAGGTACGATGACTGGAAGGACGGTCTACTGAAGAAGAACGAAGCCCGGGTGAAGAAAACCAGCCAGCACCGCCTATCGGAGCAGAAGGCTCGCATGGCGCAGAAGCTGCAGGACAGGAAGGAGAGCGTGAGTCATCAGACATCTGCCTCTGTTAGTTTGCAGAAGGACCCCGTGGAAGAATGCCTCGTGGGATTCTCGCAGTTGGAAGTGGACGAAAGCAAAAGTGCGCAGCAACAGATGAAGGTGGTGCTCGCCGAGCTGCAACGAGAGCTGGATACCGACACGGACAGCGAGCCGGTTTTCCTGAAGAAGAGGCGGCTGAGGAAGAGAAAGCCCGTGCGGTACATGGAGCTGTCTGAACCGGATGACGATGCTTACATCTGGTGTGACATTTGCGAAAAGCAGTATTTGAAGTACTGCACGGTGCACGGGCCGCTGCTGGTTATCCCGGATAGTCAGAAGCCGCTGGGCTGTCCGAAGCCATTCGTGAAGCTGCGTCTCTCGGGCATCCCGGGCGCGGGGATGGGCGTATGGACCGCGCAAGCCGTGCCCTCTGGGGTCCGCTTCGGGCCCTACAAGGGAGTCCTCTCTGACCGGCCTAGCCCGAAGAGCCGATACGTCTggcagGTGCGCAACGGCGCCGACAAGAAGCGGCAGTACGTGGACGGTGAGGATCTCCGCAGCGCCAACTGGATGCGGTACATCAACTGTTCGAGGACCGTGTCGGAGCAGAACCTCCAAGCGTACCAGTACAAGGGGCATATCTACTATAGGACAGTAGCGGACATCTACGCGGGTACGGAGCTGCTCGTATGGTACGGGCCCCAGTACGCCAAACTGCTCCAGATCAACGTGGACAGCTACCTCACGTCCGGACCCAGCCCCGCTGGTGACGTCGCGGGGGGAGGACCTCTGCAGGAGAGGGACGATGGTGGTCCGAGTGTTCCTAGGAATGATGAATCAAAGCAGATCCTGGGAAATGAGTGGAAGCATCGTTGTGAAATGTGTAGTAAGGGTCTTACCCGGTCATGTGATTTAAAACGGCATGCAATGACTCACACGGGCGAGAAACCCTTCACTTGTGAAGTGTGTAGCAAAGGTTTTACCGAATCAAGTAGTTTAAAACGGCATACAATGACTCACACGGGCGAGAAACCCTTCACTTGTGAAGTGTGTAGCAAAGGTTTTACCGAATCAAGTAGTTTAAAACGGCATACAATGACTCACACGGGCGAGAAACCCTTCACTTGTGAAGTATGTAGTAAAAGTTTTACCctttcaaatgatttaaaacgGCATACAATGACTCACACGGGCGAGAAACCCTTCACTTGTGAGGTGTGTAGCAAAGGTTTTACCCTTTCAAGTCATTTAAAACAGCATACAATGACTCACACGGGCGAGAAACCCTTCAATTGTGAAGTGTGTGGAAAAGATTTCACTTCGttacaatctttaaaaaaacatcgaaTGACACACGGAACAGAAAACCATTCACATGTGGCGCATGCGGGAGAGCATTCAGGCGACTCGCTCACCTGGAGAAGCACCGAGTGA
- Protein Sequence
- MDDPERMDVSGFWTKSEWKKLTAEQKHLSKCMYVDYMRGVIPKPIIIQRYDDWKDGLLKKNEARVKKTSQHRLSEQKARMAQKLQDRKESVSHQTSASVSLQKDPVEECLVGFSQLEVDESKSAQQQMKVVLAELQRELDTDTDSEPVFLKKRRLRKRKPVRYMELSEPDDDAYIWCDICEKQYLKYCTVHGPLLVIPDSQKPLGCPKPFVKLRLSGIPGAGMGVWTAQAVPSGVRFGPYKGVLSDRPSPKSRYVWQVRNGADKKRQYVDGEDLRSANWMRYINCSRTVSEQNLQAYQYKGHIYYRTVADIYAGTELLVWYGPQYAKLLQINVDSYLTSGPSPAGDVAGGGPLQERDDGGPSVPRNDESKQILGNEWKHRCEMCSKGLTRSCDLKRHAMTHTGEKPFTCEVCSKGFTESSSLKRHTMTHTGEKPFTCEVCSKGFTESSSLKRHTMTHTGEKPFTCEVCSKSFTLSNDLKRHTMTHTGEKPFTCEVCSKGFTLSSHLKQHTMTHTGEKPFNCEVCGKDFTSLQSLKKHRMTHGTENHSHVAHAGEHSGDSLTWRSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00675450;
- 90% Identity
- iTF_00675450;
- 80% Identity
- iTF_00675450;