Esul013190.1
Basic Information
- Insect
- Esperia sulphurella
- Gene Symbol
- -
- Assembly
- GCA_947086405.1
- Location
- OX352285.1:7118537-7120996[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0053 1.3e+02 3.2 0.0 21 44 178 201 175 205 0.83 2 9 0.00075 18 6.0 0.1 21 45 206 230 203 234 0.87 3 9 0.00022 5.5 7.6 0.1 21 48 234 261 230 265 0.85 4 9 0.0028 69 4.1 0.1 21 46 262 287 258 293 0.88 5 9 0.04 9.8e+02 0.4 0.0 21 46 290 315 286 321 0.80 6 9 0.0044 1.1e+02 3.5 0.1 21 46 318 343 315 349 0.86 7 9 0.0016 40 4.9 0.0 22 46 347 371 342 377 0.83 8 9 0.00076 19 5.9 0.0 21 45 374 398 370 401 0.86 9 9 0.0005 12 6.5 0.1 21 46 402 427 397 433 0.88
Sequence Information
- Coding Sequence
- ATGTCGTGTGTAACATCCCTCAGTGACGTGACCGTCAAGGAGGAGCCGCACTGCGAGGAACATGGCGACGAGACCGCGGTACGAGGACAGGAGTCGCAAGTGAAGCGGGAGCCCGAGTCCGACTGCAGCGATGGTCAAGTCAAACAGGAGCCCGACGACTGGCCAGAAGTAAAAGTAGAGGATCCGTACTCGCTATACCCAGACCATGAGGTGAAGGAGGAAATGGTCATCGGGCTTGAAGGGTTGCAGCAGCCCCTACCAGAGAACGCTAGAGCACGACAAGAACCCTTACGTCAGTATAAGAAGTGCAACCATAGCGGCCAGTCATTGTCATGTGAAAGTTGCGAGAAGACCAATAACATTACACACAGCCAGGTGTCATCTAACACTTGTGACAAGAAGACTAGTTCCAAAAACACTTCATTACTTCACCAACGGAGTGGCACTGGGAGGAAACCATTTCCATGTGATACGTGTGAAAAGACATTTACATATCGTTTTCTCCTAAAGAAACACCTACTTGTACACAGTGGAGAGAAGCCATTCACATGCGACGTTTGTAATAAGAAGTTTAAAGAGAGGTCGTCACTGGCAAGTCACTTACTTATTCACAGTGGAGAGAAACCATTCACGTGCAATATTTGTTCTAAGAAGTACACACGAAGTTCATCGTTAACAATTCACCTGCGTGTTCACAGTGGAGAGAAGCCATTCACTTGCGACGTGTGTAATAACAAATTTACAGAGCGCAAGTATCTAATACGTCACCTACGTGTTCACAGTGGAGAGAAGCCATTCTCATGCGACGTTTGTACTAAGAAGTTTATGGAGAGGAAGTGTCTAACACGTCACCTGCGTGTTCACAGTGGAGAGACGCCATTCTCATGCGACGTTTGTAATAAGAAGTTTAAAGAGAGATCGTCACTGGCAAGTCACTTACTTGTTCACAGTGAAGAGAAACCATTCGCGTGCAATATTTGTTCTAAGAAGTACACACGAAGTTCATCATTAACAATTCACCTACGTGTTCACAGTGGAGAGAAGCGATTCACATGCGACGTTTGTAATAAGAAGTTTATGGAGAGGGGGAATCTGACACGTCACCTACGTGCTCACAGTGGAGAGAAGCCATTCACATGCGACGTTTGTAATAACAAGTTTACAGAGAGGAAGAATCTGATACATCACTTTCGTGTTCACAGTGGAGAGAAGCCATTCGCATGCAAGATTTGTAATAAGAAGTTTACACAGAGGTCGTCACTGAAAACTCACTTACGCATTCACAGTAGACGTCCGCCGCCGCCGCCAGCTCTTTGA
- Protein Sequence
- MSCVTSLSDVTVKEEPHCEEHGDETAVRGQESQVKREPESDCSDGQVKQEPDDWPEVKVEDPYSLYPDHEVKEEMVIGLEGLQQPLPENARARQEPLRQYKKCNHSGQSLSCESCEKTNNITHSQVSSNTCDKKTSSKNTSLLHQRSGTGRKPFPCDTCEKTFTYRFLLKKHLLVHSGEKPFTCDVCNKKFKERSSLASHLLIHSGEKPFTCNICSKKYTRSSSLTIHLRVHSGEKPFTCDVCNNKFTERKYLIRHLRVHSGEKPFSCDVCTKKFMERKCLTRHLRVHSGETPFSCDVCNKKFKERSSLASHLLVHSEEKPFACNICSKKYTRSSSLTIHLRVHSGEKRFTCDVCNKKFMERGNLTRHLRAHSGEKPFTCDVCNNKFTERKNLIHHFRVHSGEKPFACKICNKKFTQRSSLKTHLRIHSRRPPPPPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00674496;
- 90% Identity
- iTF_00674496;
- 80% Identity
- iTF_00674496;