Etag017701.1
Basic Information
- Insect
- Erynnis tages
- Gene Symbol
- Rfx2
- Assembly
- GCA_905147235.1
- Location
- LR990076.1:1675002-1683891[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-37 9.6e-34 115.9 0.0 3 78 114 189 112 190 0.97 2 3 1.8 1.7e+04 -3.4 0.0 3 12 257 266 256 269 0.80 3 3 0.81 7.5e+03 -2.3 0.0 25 38 529 542 526 548 0.76
Sequence Information
- Coding Sequence
- ATGGGCTCGGGCCCATTCGATCTGAACAGCCTGTGGTCGGCGGTGGGCTCCATGGGCGCCGCCGACGGGGAGCCGCAATGCGAGGGCACCAACGGAGTCAACTACCACGTCCAGTATGTGGAGCCTCAAGCACTCTACACACAAGAACACCAGCCGCTTTTGGAGCCGCTGCGCTCGTACCCCGTGTACAGCGTGGGCGTGACCGTGGAGGAGCCGGCGGAGGAGGGCGCGGGGGCGGAGGCGGCGGCGGGCGCGGGCGCGGGCGCGTGGGAGGGCGAGTTCACGTTCGCGCCGGACGCCGCCAGCGCCGCCGCCGCGCCGCCCGCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGCGTATCGCTGCCGCGCTCGACGCTGTACGCGCACTACCTGCGCCACTGCTCGGCGCACCGCCTCGAGCCCGTGAACGCGGCGTCCTTCGGGAAGCTCATCCGCTCCGTGTTCATCGGCCTGCGCACGCGCCGCCTCGGCACGCGGGGCAACTCCAAGTACCACTACTACGGGATCCGCGCCAAGCCCTCCGCCAACGGGGACGCGCCGGCGATGATATCGCCCAAGAATGATGCGATGGAACCGCAGCCGGAGCCCCGCGAGCGCGAGCCGGAGCAGACGCCGGTGGGGCTGTCTGGCATCGCGCACCGGCAGTACCTGGGCGCGGTGACGGCGCCCGAGCCGCCCGAGCTGGTGCTGCACGACGTGCCCGGGGACGTGCCCGCCGCCGCCGTGCAGTGGCTGCGGGACCACCACCGCGCACACGGCGTGGAGTTCCTGGAGGCGGTGGCGGCGCTGGACATCGCGGGCGTGGAGCGCGCGCGCCGGGCCTTCTGGCGGCGCGGCGCTGGTAGTACTGGCGGTGCGGGGGCGGAGGGCGGGCTGTGCCGGCGCGCGCTGTGCCGGCTGGCGGCGCTGCGGCCCGTGGCGCTGTGGCTGCGCGCCGCCGACCTGCAGCTGCACCAGCGCGCCGTCGACCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCCGCGCAGCTCACGCAGGCGATCCGCAACTTCGCCAAGAGCCTGGAAAGCGCGCTGGCAGCGGCGTCCAGCGGCGCCCCGGCCCTCGCCGCCCGCGCGCAGGCCTCCGCCGCCGGCGCGCTGGCCGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCTGCAGATCCAGCAGATGGTGGCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCCTGCGCGTGTGGCGCCACGCGCGCCGCCAAGCGCCTCGAGGCCGACTTCAAGGCGACGCTGGGGCGCGGCGCGACGCTGGAGCAGTGGGCGGCGTGGCTGGAGGGCTGCATCCGCGCCGCGCTGGCGCCGCACGAGCGCAAGCCCGACTACACCGCGCGCGCGCGCCGCCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGTCCTTCCTGCTGGAGCGCCGCGTGGCGCGCGCCCTCGCCGCCCCGCCCATCGCCGTCATGCACCCGCACATGGACGACGACATGGACTCCTTGGAGGAGTCGACGGCGGAGGAGGGCGAGGAGGTGGAGGCGGGCGAAAATGGAGAGGGGGCGGAGGGAGTGGAGGTGCTGGAGGGCGGCGACAGAGTGGAGGGCGCGGAGGGCGAGCAGGAGTGGGAGTGGGCCGACGACGACGAGGACGACGACGAGCCGCTCGACAACAAGAAGCCCAAGCTCGAACTGTGA
- Protein Sequence
- MGSGPFDLNSLWSAVGSMGAADGEPQCEGTNGVNYHVQYVEPQALYTQEHQPLLEPLRSYPVYSVGVTVEEPAEEGAGAEAAAGAGAGAWEGEFTFAPDAASAAAAPPARMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSAHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPSANGDAPAMISPKNDAMEPQPEPREREPEQTPVGLSGIAHRQYLGAVTAPEPPELVLHDVPGDVPAAAVQWLRDHHRAHGVEFLEAVAALDIAGVERARRAFWRRGAGSTGGAGAEGGLCRRALCRLAALRPVALWLRAADLQLHQRAVDLLLPDVLRPIPAQLTQAIRNFAKSLESALAAASSGAPALAARAQASAAGALAAALRRYTSLNHLAQAARAVLTNHLQIQQMVADLNRVDFRVVREQAAWACACGATRAAKRLEADFKATLGRGATLEQWAAWLEGCIRAALAPHERKPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSFLLERRVARALAAPPIAVMHPHMDDDMDSLEESTAEEGEEVEAGENGEGAEGVEVLEGGDRVEGAEGEQEWEWADDDEDDDEPLDNKKPKLEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -