Basic Information

Gene Symbol
stc
Assembly
GCA_905231855.1
Location
HG993127.1:63444289-63448605[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2 2.7e+04 -4.2 1.6 15 19 423 427 422 427 0.81
2 11 0.06 8.1e+02 0.8 0.2 4 10 456 462 455 463 0.95
3 11 6.1e-07 0.0082 16.7 15.1 1 19 468 485 468 485 0.93
4 11 1.1e-06 0.015 15.9 13.1 3 18 523 538 521 539 0.91
5 11 1.3e-07 0.0018 18.9 18.6 1 19 579 597 579 597 0.98
6 11 8e-05 1.1 9.9 16.7 4 18 645 659 638 660 0.86
7 11 0.045 6.1e+02 1.2 12.0 1 11 700 710 700 722 0.91
8 11 4.9e-10 6.7e-06 26.6 15.5 1 18 727 744 727 745 0.97
9 11 2 2.7e+04 -7.3 17.7 4 18 782 801 778 802 0.72
10 11 4.6e-08 0.00063 20.3 15.0 1 16 838 853 838 863 0.88
11 11 4.4e-07 0.006 17.1 12.2 1 18 870 888 870 889 0.89

Sequence Information

Coding Sequence
ATGGGTTTCTGCTTAATCCATGCTGTTTTCGTAAGACTTCAGTTTAAAAACCGCATCCATTTTAAGGACGAAATTGATATAGCAGCACAGGAGATTCAATATTTAATAACGGATAACCTACCACCTCACACTCACGACTTTACACCGCTCAGCAATGCCACATCAGCGGTGGGTGCATATGCTAAACAATTTCTCAATAAAGTGGTGAATTTCTATTTTCAACGGCGAGATAGAAAAAAGAAGGGCATTCAAATGTCAGACGCCTTTCGTCGCTATCACGACGGAACACGGGGTAGTAGCGCAGCTGGCAGTGCGACCAACAACAATTATGTAAACTTCAACCAGTTCATGATGCAGCATAACATCATCGGCGGTAGCAACGGCAGTCTGGGTGGAGACGGAGGAGTCGATTCGTTGTCCGCGTCTTCAACAAATCCATTCCATTACAATGGTGGCTACGGGCATCAATATCAGATGGACGACTACTACTTTGCTGGCGGTAATAATGGTAGCAGTGACGGAGGAGGAGGCGATATTGCTTCGTCTGCATACACTAATTATCAAGAACCTTCCAATTATTCGAATTCAACACTTCACGCAACAGCAACCGAATTTATACCGAGGTTCTCCAATATTTCACTGTACGACCCCGCTTGGGATACTGGAAAGACGAATGACGTGGCAATAACTCCAGTCGAGACTGCGGCCGATGTTCAAAATGCCAACACCAATGGAACTGTCGCACCGTCCACTAGCAGGTCCACCATCCAACCCGACAATGGACACTCGCCTCCAAACAAGTCTCCACCACAGCGTTATACAGGTGCTACGAGCAAAAACCGTGACTCAACATCTCGAGGTAATCCCCCAGCAGGGGCTTCATCGTCACGACGACAGAACGGAAGAGAATATCACCGCAACCAACGTTACGACAATCATCGAAGTAACAAGCGCAGAGATGACTGGAACAGAAATCGGGATCGCTTGACGGGTTTCAGGGAGGAAAAGTATACTGTGGAGAATGGAAAAGACAGTCCACAGAATTCGCCCGAGAAGAAATCACCGAAAAAGACCCAAACCGAAAAATTGTCGCAGAGGGAGAAACTGGTCCGAGAAATAGAAGGTAGGCGCCTTGAATGCCTTGTGTGTGTGGAATTAATCAAATCGCATAACTCGGTCTGGTCGTGTCACAATTGCTACCACATCCTACACTTGAGTTGCATAATCAAATGGGCATCCAGTTCGAAGTCGCAAGACGGTTGGCGTTGTCCGGCATGCCAAAACGTCGAAAAAGATGTGCCACGTGAATACTATTGCTTTTGTGGTAAAGTGAAAAACCCGCAGTTCAACCGAAACGATATTGCACACAGCTGTGGAGAGGTTTGCGGTCGTGTTGAAGGATGTTCCCACGCCTGTACTCTTCTGTGCCACCCGGGCCCTTGTCCACCCTGTCAAGCGTTCGTTACTCGCGAGTGTGGATGTGGAAAAACCAACAAGACTATGCAATGCTATCTAAAAGAGTCCATCGAGTGCGAAGCGAAATGTTTAAAGTTGCTTAACTGCGAGCTACATGAGTGCGAGGAGAAGTGCCACGACGGCAAGTGCAAACCATGCGAGCAAAAGGTTGACCAAAAGTGTCATTGCAGTAAGCATGACCGTCAAGTGATCTGTACACGGGACTCTCATGATAAGAAGACGTATTCCTGCGGAAAGCCGTGTGGCAAGGATTTGAGTTGTGGAAATCACAAGTGCAAGGACTGCTGCCATGCCGGAGAGTGTCGTCCATGCAAATCGAGTCCAGAAATGGTAACATCTTGTCCCTGTGGTAAGATGCCAGTTGTTTTGGAGCAGAGAAAATCGTGTTTAGATCCAATTCCTGTGTGCGATGGGGTTTGCAACAAGACGTTGCGTTGCGGAAAGTCAGCTCATCCTCACCATTGCACGAGTAAGTGTCACCTCGGCAATTGTCCACCATGCAACAAGCAAACTGCAGTCAAGTGTCGCTGCGGGCACATGGATCAGATGATAAAATGTCGACAGTTGTCCACCAGAGCCGACGATGCACGTTGCAAGAAGCGTTGCGTGAAAAAACGCTCCTGTGGAAAACATAAATGCAGCCAAGAATGTTGCATAGATATTGACCACATCTGTCCGATGCCCTGTAACTACACGCTGTCGTGTGGCAAGCACAAGTGCGACCAACCATGTCATCGAGGCAATTGTCCTCCCTGCTATCGCAGTTCATTCGAGGAGTTGTACTGTGAATGTGGAGCCGAAGTAATCTACCCCCCAGTTCCGTGTGGCACAAAGCGACCGCCTTGTAAAAGGCCTTGCTCCCGTCAACACCCCTGCGAACATCCAGTTCAACACAACTGCCACTCTGGACCCAGTTGCCCACCTTGTATGATGTTCACCACGAAGTGGTGTTTCGGTCAACATGAACAGAGGAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGCCTGGCTTGCAACAAGCCGCTGCCATGTGGACGCCACAAGTGCATCAAACCGTGTCATGAGGGTCCCTGTCAAGTGACTGGCGAAGTCTGTAAACAGAGTTGCACCACAGTAAGGCCAGCATGCGGGCATAAGTGTATGGCACCTTGCCATGATGGAGACTGTCCTGAGACGGCGTGTAAAGAAATGGTGGAAATGTCTTGTGAGTGCGGCAACCGGAAGCAGATGCGAGCTTGTCATGATTTCGCAAGGGAGTACCGTCGCATTGCAATGGCTCAGTTAGCATCGTCCATGGCAGAGGTTCAGCGCGGCAACCAGATCGAGTTGAGCGACATTCTGGGTCCGGCGAAAGTGAATAGCAACAAAGCTCTTGAATGCAACGATGAGTGCCGTACGTTGGAGCGCAACCGACGCCTGGCCATCGGTCTCCAAATCCGTAATCCTGATTTGCCACAGAAGCTACTTACCAAATATTCGGAATTCATCCGAGGTTACGCGAAGAAGGATCCTACTTTGGTGAAGAATATTCATGACTCCCTTACAACACTAGTAAAACTTGCAAAGGAAAGCAAGCAAAAGTCAAGAAGTCACTCCTTCCCCACAATGAACCGTGAGAAAAGACAACTTGTCCACGAGATGTGCGAAATGTTTGGTGTTGAATCTGTGGCGTACGACGCCGAACCGAATCGGAATGTCGTTGCCACTGCTTACAAGGAAAAGTCTTGGTTGCCAGCTCAAAGTATAATGGAGGTGATACAACGCGAGAGTGGCCAACGTCGCGTTCCAGTGCCAAGCAACAATGCATGGGGCATCAAGAGATAG
Protein Sequence
MGFCLIHAVFVRLQFKNRIHFKDEIDIAAQEIQYLITDNLPPHTHDFTPLSNATSAVGAYAKQFLNKVVNFYFQRRDRKKKGIQMSDAFRRYHDGTRGSSAAGSATNNNYVNFNQFMMQHNIIGGSNGSLGGDGGVDSLSASSTNPFHYNGGYGHQYQMDDYYFAGGNNGSSDGGGGDIASSAYTNYQEPSNYSNSTLHATATEFIPRFSNISLYDPAWDTGKTNDVAITPVETAADVQNANTNGTVAPSTSRSTIQPDNGHSPPNKSPPQRYTGATSKNRDSTSRGNPPAGASSSRRQNGREYHRNQRYDNHRSNKRRDDWNRNRDRLTGFREEKYTVENGKDSPQNSPEKKSPKKTQTEKLSQREKLVREIEGRRLECLVCVELIKSHNSVWSCHNCYHILHLSCIIKWASSSKSQDGWRCPACQNVEKDVPREYYCFCGKVKNPQFNRNDIAHSCGEVCGRVEGCSHACTLLCHPGPCPPCQAFVTRECGCGKTNKTMQCYLKESIECEAKCLKLLNCELHECEEKCHDGKCKPCEQKVDQKCHCSKHDRQVICTRDSHDKKTYSCGKPCGKDLSCGNHKCKDCCHAGECRPCKSSPEMVTSCPCGKMPVVLEQRKSCLDPIPVCDGVCNKTLRCGKSAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCSQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCSRQHPCEHPVQHNCHSGPSCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLPCGRHKCIKPCHEGPCQVTGEVCKQSCTTVRPACGHKCMAPCHDGDCPETACKEMVEMSCECGNRKQMRACHDFAREYRRIAMAQLASSMAEVQRGNQIELSDILGPAKVNSNKALECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSEFIRGYAKKDPTLVKNIHDSLTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMEVIQRESGQRRVPVPSNNAWGIKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542617;
90% Identity
iTF_00672556;
80% Identity
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