Basic Information

Gene Symbol
JARID2
Assembly
GCA_905231855.1
Location
HG993126.1:45839011-45855231[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.7e-22 1.2e-18 67.8 0.0 6 89 1666 1747 1661 1747 0.92

Sequence Information

Coding Sequence
ATGGTGGTTTCAAAAGACTCCAAAAGAAAGCGCAAGGAGTCCCCGCTCATCGAATCATCACCCGAAATGCCAAAGAGGACAAAAGTGCAAGCGCAAAGGAAATTTGCTCAGGGGCAAAGTGCACCAACATCGTCGTTCAGTTCTGCATTAGCTTCGTCTTCAACTGCGGCTGCAGGTGGTAGCGCAGCTTTGGGAAATGCCTCCACTCAAGAAAATCGAGAACCCCCCACAGAAATATTGCCCAACAAAAGGCCCAAAACTGAAGATTTCCTTACGTTCCTTTGTTTTCGAGGTACACCAGCGTTACCTTCTCATTTAGACTTTTTGAATCAAAACACATCACAGTCGTCTAAGGATGAAGTTTCAAAAACTACTGCTGACGAGAAGGCGAAAGAGGATGATGTGTCTGAAAAGAAACTGAACGTACAGAAGGGCACAAGATCTAAGGCACAGAAAAAGAACGAAAAGGGACCTGCAATGGACGAGAGTTCTTTAACAACAACGAGCACGAAAAAGCCTGAATCGAAGAAATCCATAGCAAAGAAGAATGAAGAGGGAAAAGCGATGACGTTTCCTGTTAGAAAGAGGGCTGAATTGCTGCCAGATGGCAATAGGCGTGGTAGACCCACAGATAAATCAAAAGAGAAACTTAATAAATCCACTGAAGGTAGTCGCCGTTCTGTTAGAAACAGAGATGTGTCTAAATCTCTTGCAGAGCCAGACGACGATGAAACAGAAACGAATGAAGTTGAAACAGCGTCCGTAGATAGCGGTCAAGATGGCACGAAAAAAGAAAAAAATCAAACTCCACAACAGAAGCCCAAACGGGGAAAACAGCTTAATTCTGGGAAGAAAAAGCAGGACATTAGCGTGCCAGAGGTATCGCGGACACAGAATTCATCCTCCCAATCCATTGAACCTGGCAATCAAATAAAACCGGCGCCGGTGAAAGAGAAGCCCTTAAAGAGACCACGCCAGAAAGAAGCTCCAATATTTGTCCCATCACCGGAGCCAACAGGAAGAATGACACGTCAGCGAGCATTCTTTGAGCCCGTAAAGGTAATTCACCGAGATGAAAACGAAGACAACACCGAGAAGAAAAACGAAAAAGTTGAAGATAAACTTAAGTCATCGCCGGTGCCATGTGCTATGGAAAAAGATGATGACAATGCATTGGGAAAAGACGTTTTTGAATTTTCTTCTGAAGACGAGCAGCCATTAGCAAAGTCCATCAAGATAAAGAACACGAAAGCAGCATCAAAAAAAACTCCTGTGAAGAAAAAGCAGAAGGCTCAAACAGCTGTCGAAGTAGAATCTCCATCAAATGTTGATAGCACGGTGCATGATAATACGCTGGATAAAAGTGATCACATCAAAGACGACAAAGAGGTCGTGAATCCTGATCCGGTTGAGAAGAATGCTGTTCCGGAAAAAGACGAGGAGGGAGAAAAGTCCATTCCCGAAAAGGTTAAAAAGTCAGTTGGGAGGAAGCCTAAGAAAAAACTAATGGATAATCAAAAGGCTCTCCCCGAAAAGCCTTCGAAGAGCTCGAACGAGGAAGACACTAAAACCGCGCAGAAATCAAATTTGATAAAAGTAGAATCCGCGGAGAGTGAGTTGAAACCAAATTCCACAGCTCTGACATCACGGCAAAAGAAAAAGGCGGCACCAACTACCACAGTTCTGCGTTCCCCAAACGCAGAAACTGCCGAACCAGAAGCTCGTAACACACGGCCGACAAGAAAAACAAAGGAAGCAGCAACAATTTACATGGGAATAATTGGTCAAAAACTGCAACAAGATGAATTAGAAGACGACGAGCTATCGCTTAGTAGTTTTCCAGATTTGCCGAATGTAAAAGAAATGGAGAAAATGGAAACGGAGCTAAAAAAGAACGTCGACCAGAACAAACAGACTCCGAAACAGAAAGATGCAGGCGATGCTGTTAAACTAGAAGAAAAACCTATCGTAAAGAGTACCGAAAAGGTACCCGCACGAAGGGGACGCCCTCCGAAAAACCAAAATGGCAAAAATTCTAAACAAAAGCCAGCAAAGCCGCAAATCGAGGGAATGCTTCGAAAACGCGAGGAACCGAAACCCGAAGACAAAGACGAGAAAGAAGATGAAGAGGATTATCTTATAAGTGAAGAGGTCAACGAAACCAAAAGAAAACTCGAGAAAAGCTTCAGTGATTCAGACGATGAACCGTTAGCTATTAAACTAACTAAAAGCAGCGAGAAGGGTTCTGACCATTCAAAAAAGTCCGATATGGCACCGGTAATAAAATCACCGAGTACAAAAGATAAATGCCAAGAAGAAACGAAGACGTCTCCGAAGATGTTGAATATTTTACCCATCACAAGTGCAGCTACCTGCTTGCAGGCACATGCGACAACGTCATCACTGATGGGCAACATTATTGCAGATAATAAAGCAAAGTTGGATGAAAAACCGAAGTTGCCAATTACTTTGCCTAGTCCTGCTCCCCCGTATATTCCCCCACAGCCGGTTGTTAAATCTCCTCAAACGCAACCACCTCCCATTCCTCCGTTACCGCCCACGATAAAATATCAACCACCTCCCACCACATATCCACCCCCGATTGAGGCATATCCTTCGCCGAAGATCAATCCAAACTTTCTTACGCCGAAATTCGATCGGAATATAGAACGCCGGATTGTTTCCCTTGAAGGCTCTTCTACTCTATCCACATTGCAAAGGCCAAGCAGCAGTTTCCCATCGCCCTCCCCCGTAAAATTTGACATGTCTTCTTCGAGGACTCCGAGCACATCAAATCCAAAAGCACCGGTGATACCGCCTACAACGCCGTCGAACGCTGATCGTTCAGCTGATCCACTCAAAGACGAAATTGGGAGCATTCTCGCCGCTAATTTAATGCCCAGTAAAGAGGAGTCGGGAAAAATTTTCGGAATTGCCAGCGTTAGTTTAGCTCAAAGCTCTGGCCCTGACAACACCAAATGCACCCTCGGCAAATGTGGCTCCATCCACAAGCCTGTGTTAGGACCAGTAGTGCCAACTGAGTCATATCTGGGCGAACAACTCTCTAGCAAGGAAAGGCGTAAAGCTAAGGTGAATATGACACATGAACAGATCCAGAAATGGCTGATTGAGTGTTCTTCAAATCCTGATGAAATACAAGACGATTTAGATGACGATTACGACGATAATTTGCGTCCAAACATATACGCTACAACTCCTCCTCCTACGAGAGACGATAAAGAAAGCACTACATTTAGCTCTTCGTCAAAGACCACGAGGGACCTGGGCAAAAGTGAAAGTGCTTGGTCAGGTAAAGGTCCTTCACTCAAAGCCACACCAGTCGTGGTGCCTAAAGACGACCAACGTGCTGAAGAACCTGAACCAACAAGTAAGGAGCCAAAGGAAACTTCTAAGGATTACCAATCACAAAGAAGTTCCTCTGCAAATAAGAAAAATGATATATCTGCAAAGGGGAGAGAAAAGTCCAAAATTGACAAGGCAAAAGAGGAACGGGAAGCAAAAAAATTACAGGAAAAACCCCTGAAGGAAGGCGTTACGTCAAGAGGTGGAAAGGTAAATCCTGCAGCAGCAACAGCCAACACACAACGGCAACAAAAGAAAACAGACGAGAGAAAAACCAACTCAATATCGCCCCAAACATCTAAAACAAAGGAAAGTGCGCCTGTAGGCACACCGAAGACCCCGAAAAGAACAACCGTATACAATTCTAAGCTAAAAGAAACTACGACGACCAGTCATAAGAAAAAATCGCCATTTACGTACAATTTTGGCGCTTTTTCGGCAGATAACGAAAAAAGTATTTACTCCTTCGACAAAGAGGATGACGATAGCAAACTGCCTGTGTCCAAACCGTTTAGGAGACAAAGCCGGCGCGAATCTCATACAGAGGAACCGAACCAAACCGAAAGTTTGCCACAAAAGAACGCCACTGGTGAAAAGAAAGAAGGAAACGCAACACAAACCAGTGTGTCAGTAACGCTCAGCACGGAGGAGAACAGTAAGCTGGTCAAGGTTGGTCTGGAGTCAGAGCAGAGCAAGCCGACCGAAGTAACTGAGAAATCAAACGACTTCAACTTGGGCGACTCTGATTCCGATATTCACACATTTTATATACCACTTCAAGGGACGGGTGTGGGCGGCATCGGTGAAGGCAAATCAGATCTTATTCAAGGTGTTGCAGTTAAACTTGGTCGAGAAGGGCCTGAGGGTCCAAATCAGAAGGTTGTTATGCATGCAACCTTGGTAACTAAGTCACAAATGGGATCAAACTCAAAACCACTTCCGGACTCTATGAATGTTTCGGAAATAGTGAAAAATTTGCTCGGCTCCGGGGCCATTAACAATAAAGACACTAACACCATTATAACCGCGCCTGTAGCTCCGGCTCCGGCTCCAGTTCCAAGTCCCGCAGTAGTAACTTCTCCCCAGCAAAGCGCATTAAATGTGCAAAATGCAACTGCAGGAACCTCTTCCTCCGTGGCGGTGAGTAGTTCGAAAAGCGTCCCAATTGGCACAGTTCAGCCAAGGTTTAAGTCGGCTGAAACGACAGTATCCACTCAACAAAATCACCCATCGGGCTCGGGCGGTGGCGGCGGCGGCGGCGGTGGAGCTCTGACAAGAGTCAATTCAAACTCCTCCCTCTTCTCTGGTTCAAATAAGTCTCGAGGTCAATCTAGTAAGAAGATCAAAGACGACACTCCCATTAAAATGTGCAATAATACAGCGTTTCCCAGACATGATGATCCGACTCAGATGGTTGAAGCTCCAATATTCCGGCCAACCGAAAAAGAGTTCTCTGACCCCATAGAGTTCATAGACAGGATTACCCCCATTGCTGCGCGCTTTGGAATCTGTAAGATAATACCGCCGGCGAGCTTCAAGCCGGAATGCCGAGTTTCTGATGATATGCGGTTCACCGCGTACAACCAGTACGTACATAAAATGCTCCACAGGTGGGGTCCTAGTGCTAAGGAACTTAGTGCAATAAAGAAGTATTTAGCTACACAAAGCATTGTAATGAATCATCCACCATGGATTGGAGGTATGGAGGTGGACTTACCGCGGCTCTATCACACCGTTCAAGAGTTAGGTGGCCTCAAAGAGGTCATTGAGAAGAAAAAGTGGGCTCGTGTAGCTGAGGAAATGTGCATTCCGAAGTTAGCGCAGGATCGCGTAACAAAACTCGATGATATATATTGTAAATATCTACTCCCATATGATACACTATCCCCCAGCGAAAGGCAAAAACTCTTTGATGAAGTGGAAGCAGACTGGGCTAAGCGTGAAGCGAGGGCCAGACGAAATGCCGACCGCTTCGTAAACACTGAAAGTGTGAGTAATGAAGATGACGATGTGTCTAGTGAAGATGAGGAAGAGTCTGAAGAAGAAGTTGATGGAGTATCGATGGAGTGCATTGTAAAAGGTCGAAGTATGCCTTTAAGTCAGTTCTATCGTATTGCTCGAAACACAATGTCCTTATGGTTTAAAAATGCAGAACCTTCTGTGACAGAAGTGGAAGCTGAGTTCTGGCGTCATGTTGCTGTGCGAGATAGCCACGTTTGCGTACATTCCGGTTCAATTGATTCCAGTGGATGGGGATATGGATTCCCGTCTCCTGGACCCAAGGGAAAAGGTTCTGTTTGTGCCAGGCATCCATGGAATCTAAAAGTGTTAACAAACAATGCTGGATCTGTTCTACGATCATTGGGTCCAGTGATGGGTGTGACTGTGCCAACGTTGCATGTGGGTATGCTGTTCAGCGCATGTTGTTGGTATCGTGATCCACATGGACTTTCATGGATTGAGTATCTGCATACAGGTGCAAGTAAATTGTGGTATGGTATTCCTGATGACCAAAGTGCGAATTTCCGAGCCGCTCTTACTTCGCTCATTCCGACGCATTGCCAAAACAAAACCATTTGGCTGCCTTGTGACACAGTAATGGTGCCTCCGCATATGCTAACTGATCGTGGAGTTTCATTGTGCCGAATAGAACAGAAGCCTGGAGAGTATGTTGTTATTTTTCCTAGAGCATATACGTCAAGTGTTGCCACTGGATACGTAGTCTCTGAGAGCGTATACTTTGCAACAAGCTCATGGCTTGAGCTAGGAAAGGACGACTTTAGGGATATTCATGACAGTTGCGAACCAGCAATGTTTTCGCTGGAACAGTTGTTGTTCGCGTTGGCTTCAGACCAACGTGTAACAGTTGATGTTCTCTCGCAAATGTTGCCAATGATAAATGAAGTATTTGAAAAAGAGGTTGCCGCTCGAGAACAACTAAAGGCAGCAGGGGTAACATCAACAGAAAAGATTCCTACAGAAAAGACAGCCAAGTCAAAAAAGCACCCCATCGCATCTCTTCAACACGAGTGCGACCTGTGCCGTGCAAACATTTATATATCTATGGTTAAGACAGATGAAGGCAGCATATATTGTTTGCAGCACGCCCTCAAGAATCTTAACAAAGGCAACATCCAGGCCAAGCAATGCAAGCTCATATTTAGCTATAACATTGAAGATATTGATAATCTCATTAAGACCCTAAAGGATCGACTTGCACAGAAACGAACAGCTGCCAATAAAAAATCAAAGTAG
Protein Sequence
MVVSKDSKRKRKESPLIESSPEMPKRTKVQAQRKFAQGQSAPTSSFSSALASSSTAAAGGSAALGNASTQENREPPTEILPNKRPKTEDFLTFLCFRGTPALPSHLDFLNQNTSQSSKDEVSKTTADEKAKEDDVSEKKLNVQKGTRSKAQKKNEKGPAMDESSLTTTSTKKPESKKSIAKKNEEGKAMTFPVRKRAELLPDGNRRGRPTDKSKEKLNKSTEGSRRSVRNRDVSKSLAEPDDDETETNEVETASVDSGQDGTKKEKNQTPQQKPKRGKQLNSGKKKQDISVPEVSRTQNSSSQSIEPGNQIKPAPVKEKPLKRPRQKEAPIFVPSPEPTGRMTRQRAFFEPVKVIHRDENEDNTEKKNEKVEDKLKSSPVPCAMEKDDDNALGKDVFEFSSEDEQPLAKSIKIKNTKAASKKTPVKKKQKAQTAVEVESPSNVDSTVHDNTLDKSDHIKDDKEVVNPDPVEKNAVPEKDEEGEKSIPEKVKKSVGRKPKKKLMDNQKALPEKPSKSSNEEDTKTAQKSNLIKVESAESELKPNSTALTSRQKKKAAPTTTVLRSPNAETAEPEARNTRPTRKTKEAATIYMGIIGQKLQQDELEDDELSLSSFPDLPNVKEMEKMETELKKNVDQNKQTPKQKDAGDAVKLEEKPIVKSTEKVPARRGRPPKNQNGKNSKQKPAKPQIEGMLRKREEPKPEDKDEKEDEEDYLISEEVNETKRKLEKSFSDSDDEPLAIKLTKSSEKGSDHSKKSDMAPVIKSPSTKDKCQEETKTSPKMLNILPITSAATCLQAHATTSSLMGNIIADNKAKLDEKPKLPITLPSPAPPYIPPQPVVKSPQTQPPPIPPLPPTIKYQPPPTTYPPPIEAYPSPKINPNFLTPKFDRNIERRIVSLEGSSTLSTLQRPSSSFPSPSPVKFDMSSSRTPSTSNPKAPVIPPTTPSNADRSADPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDYDDNLRPNIYATTPPPTRDDKESTTFSSSSKTTRDLGKSESAWSGKGPSLKATPVVVPKDDQRAEEPEPTSKEPKETSKDYQSQRSSSANKKNDISAKGREKSKIDKAKEEREAKKLQEKPLKEGVTSRGGKVNPAAATANTQRQQKKTDERKTNSISPQTSKTKESAPVGTPKTPKRTTVYNSKLKETTTTSHKKKSPFTYNFGAFSADNEKSIYSFDKEDDDSKLPVSKPFRRQSRRESHTEEPNQTESLPQKNATGEKKEGNATQTSVSVTLSTEENSKLVKVGLESEQSKPTEVTEKSNDFNLGDSDSDIHTFYIPLQGTGVGGIGEGKSDLIQGVAVKLGREGPEGPNQKVVMHATLVTKSQMGSNSKPLPDSMNVSEIVKNLLGSGAINNKDTNTIITAPVAPAPAPVPSPAVVTSPQQSALNVQNATAGTSSSVAVSSSKSVPIGTVQPRFKSAETTVSTQQNHPSGSGGGGGGGGGALTRVNSNSSLFSGSNKSRGQSSKKIKDDTPIKMCNNTAFPRHDDPTQMVEAPIFRPTEKEFSDPIEFIDRITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPSERQKLFDEVEADWAKREARARRNADRFVNTESVSNEDDDVSSEDEEESEEEVDGVSMECIVKGRSMPLSQFYRIARNTMSLWFKNAEPSVTEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSVCARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEYVVIFPRAYTSSVATGYVVSESVYFATSSWLELGKDDFRDIHDSCEPAMFSLEQLLFALASDQRVTVDVLSQMLPMINEVFEKEVAAREQLKAAGVTSTEKIPTEKTAKSKKHPIASLQHECDLCRANIYISMVKTDEGSIYCLQHALKNLNKGNIQAKQCKLIFSYNIEDIDNLIKTLKDRLAQKRTAANKKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00671997;
80% Identity
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