Basic Information

Gene Symbol
JARID2
Assembly
GCA_907269125.1
Location
OU026147.1:31597385-31615987[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4e-22 6.9e-19 67.9 0.0 6 89 1655 1736 1650 1736 0.92

Sequence Information

Coding Sequence
ATGGTGGTTTCAAAAGACTCCAAAAGAAAGCGCAAGGAGTCCCCGCTCATCGAATCATCACCCGAAATGCCAAAGAGGACAAAAGTGCAAGCGCAAAGAAAATTTGCCCAAGGACAAAGTGCACCAACATCGTCGTTCAGTTCAGCATTAGCTTCATCATCAACTGCGACTGCAGGTGGTAGCGCATCTTTGGGAAATGCATCCACTCAAGAAAACCGAGAGCCCCCTACAGAAATATTGCCCAACAAAAGGCCCAAAACTGAAGATTTCCTGACGTTCCTTTGTTTTCGAGGTACAACAGCATTACCTTCTCATTTAGACTTTTTAAATCAAAACACATCACAGTCGTCTAAGGATGATGTTTCAAAAGCTACAGCAGACGAGAAGGCGAAAGAAGATGATGTGTCTGAAAAGAAACTAAATGTACAGAAGGGTACAAGATCTAAGGCACAGAAAAAGAACGAAAAAGCGCCCGCCATGGATGAGAGTTCTTTGACAACATCGAGCACGAAGAAGCctgaaacgaaaaaatcaaTTGCAAAGAAGAATGAGGAGGGTAAAATGATGACGTTTCCTGTTAGAAAGAGGGCTGAATTGCTACCAGATGGCAACAGACGTGGTAGACCCACAGATAAATCAAAAGAGAAACTTAATAAATCCGCTGAAGGTAGTCGTCGTTCTATTAGAAATAGGGACGTCTCCAAATCACTTGCAGAGCCAGACGACGATGAAACAGAAACTAATGAAGTCGAAACAGCGTCCGTGGATAGTGGTCAGGACggtgtgaaaaaagaaaaaaatcaaacgccACAACAGAAGCCGCCTAAAAAgggaaaacaacttaattctgGAAAGAAAAAGCAGGATATCAGCGTACCAGAGGTTTCGCGACCGCAGAATTCATCCTCCCAATCCATAGAACCTGGCAATCAAATAAAACCGGTGCCAGTGAAAGAGAAACCCTTAAAGAGACCACGTCAAAAAGAAGCTCCAATATTCGTCCCATCGCCAGAGCCAACGGGACGAATGACACGGCAGCGAGCATTCTTTGAGCCCGTAAAGGTAATCCACCGAGATGAAAGCGAAGACAACACCGAAAAGAAGAAAGAGAATATTGAAGAGAAAACTAAGTCATCTCCGGTGCCATGCGCTACGGAAAAAGATGATGACAATGCGTTGGGaaaagatatttttgaattttcctcTGAAGACGAGCAACCGTTAGCGAAGTCCATTAAGATCAAGAACACGAaagcaacatcaaaaaaaactcctgtaaagaaaaaacaaaaggctCAAACAGCGGTCGAGGTAGAATCCCCGTCAAATGTTGATGCCACTGCGCAGGATAATACAATGGACAAAAGCCATAACATCAAAGATGATCTAGAGCTCTTAATTCCTGATCCTGTTGAAAAAAATGCTCTCCCggaaaaagaggaagaagaaaaatccaTTCCCGAAAAGGTAAAAAGGTCAGTTGGGAGGAAACCTAAGAAAAAAGTAACGGAAAATCAAAAGGCTCTTCCCGAAAAGCCCGCGAAGACCTCGAACGAGGAAGACACTAAAAATGTGGAAAAAGTGGAATCCCCGGAGAGTGAGTTAAAATCAAACTCCACAGCATTGACATCACGGCAAAAGAAAAAGGCGTCTCCAACGGCCACAGTTCTGCGCTCCCCAAATGTAGATGTGGCCGAACCGGAAACTCGTAACACACGACCGACAAGAAAAACAAAGGAAGCTGCAACTATCTACATGGGTATTATTGGTCAAAAACTGCAACAGGACGAATTTGAAGACGACGAGCTGTCGCTCAATAGTTTTCCAGATTTGCCGAATGTAAAGGAAATGGAGAAAATGGAAACGGAGCTAAAGAAGAACGTCGACCAGAACAAACAGATTCCGAAACCGAAGGATGCAGGTGATGCTGTTAAATTAGAAGAAAAGCCAGTGGTAAAGAGTACAGAAAAGGTACCCGCACGAAGGGGACGTCCTCCGAAAAACCAAAATGGCAAAAATTCCAAACAGAAGCCAACGAAGCCCCAAATTGAGGGAATGCTTCGAAAGCGTGAGGAACCGAAACCCGAAGAAAAAGACGAGAAAGAAGACGAAGAGGATTATCTCATCAGCGAAGAGGTCAATGAAACCAAGAGAAAACTCGAGAAAAGCTTTAGTGATTCCGACGATGAACCATTAGCTATTAAACTGACTAAAAGCAGTGAGAAGGGTTCTGACCATTCAAAAAAGTCCGACATGGCTCCGGTAATAAAGTCACCAAATTCAAAAGATAAATGCCTGGAAGACacgaaaatatcgccgaaaatgttaaatattttaccCATCACAAGTGCAGCTACTTGCTTGCAGGCACATGCGTCGGCGTCCTCACTAATGGGCAACGTTATTCCAGATAATAAAGCAAAGTTGGATGAAAAACCGAAACTACCAGTCACTTTGCCTAGTCCTGCTCCTCCGTATATTCCCCGACAGCCGGTTGTTAAATCTCCTCAAACGCAACCACCTCCAATACCCCCGTTACCGCCTACTATCAAATATCaaacaccacccaccacatatcCACCCCCCATTGAGGCATATCCTTCACCTAAAATCAACCCAAACTTTCTTACACCGAAATTCGATCGAAACATAGAACGCCGGATTGTTTGCCTTGAGGGCTCTTCTACTCTGTCCACAATGCAAAGGCCAAGCAGCAGTTTCCCATCACCCTCCCCGGTAAAATTTGACATGTCCTCATCGCGGACTCCCAGCACATCAAATCCCAAAATACCGGTGATACCGCCAACAACTCCGTCAAACGCTGATCGTTCAGCTGATCCACTCAAGGACGAAATTGGGAGCATTCTTGCCGCTAATTTAATGCCCAGTAAAGAGGAGTCTGGCAAGATTTTCGGAATTGCCAGTGTTAGTTTAGCTCAAAGCTCTGGTCCTGACAACACGAAATGCACTCTCGGCAAATGTGGCTCCATTCACAAGCCTGTGTTGGGGCCAGTAGTGCCAACTGAATCTTATCTGGGCGAACAACTTTCTAGCAAGGAAAGGCGTAAAGCAAAAGTGAATATGACGCATGAACAGATCCAGAAATGGCTGATTGAATGTTCCTCAAATCCTGATGAAATACAAGACGATTTAGATGACGATTTCGATGATAATTTGCGTCCAAACATATACGCTACAACTCCTCCCCCTACTAGAGATGATAAGGAAAGTACAACATTCAGCTCTTCGTCAAAGACAACAAGAGATCTGGGTAAAAGTGAGAGTGCTTGGTCTGGAAAAGGTCCCTCACTCAAAGCCACGCCAGTGGTGGTGCCTAAAGACGACCAACGTGCTGAAGAACCTGAACCAGTAAGTAAGGAGCCAAAGGAAACTGCTAAGGATTATCAATCACAAAAGAGTTCCTCTGCAAATAAGAAAAATGATATATCAGCAAAGGGGAGAGAAAAGTCAAAAATTGATAAGGCAAAAGAGGAACGGGAAGCTAAGAAATTGCAGGAAAAACCGCTTAAGGAAGGTGTTACATCACGAGGTGCAAAGGTAAATCCTGCTGCAGCAACAGCCAGCACACAAcggcaacaaaagaaaatgGATGAGAGCAAGAATAATTCAGTATCGCCTCAAACATCTAAAACAAGGGAAAGTGCACCAGCAGGCACACCTAAGACGCCGAAAAGAACAACAGTATACAATTCTAAGCTAAAAGAAACTACGACGACCAGTCATAAGAAAAAGGCACCATTTACGTACAATTTTGGCGCCTTTTCGGCAGATAACGAAAAAAGTATTTATTCCTTTGATAAAGAGGACGACGATACCAAACTGCCGGTATCGAAACCGTTTAGAAGACAAAGTCGACGCGAATCTCATACAGAtgaaccaaaccaaaccgaaaGTTTGCCACAAAAGAACGCTACTGGTGAGAAGAAGGAAGGAAACGCCACACAGACCAGTGTGTCTGTAACGCTCAGCACAGAGGAGAGCAGTAAGCTTGTCAAGGTTAGTCTGGAGTCAGAGCAGAGCAAGCCCACTGAAGTAGCTGATAAATCAAACGACTTCAACTTGGGCGATTCTGATTCCGATATTCACACATTTTATATACCTCTACAAGGGGCAGGCGTGGGCGGAATCGGTGAAGGCAAATCAGATCTTATTCAAGGTGTCGCAGTTAAACTTGGTCGAGAAGGACCAGAAGGTCCAAATCAGAAAGTTGTTATGCATGCAACATTGGTAACTAAGTCACAAATGGGATCAAACTCGAAACCACTTCCGGATTCGATGAATGTTTCGGAAATAGTAAAGAACTTACTCGGCTCCGGTGCCATTAACACTAAAGACACTAATGCCATCATAACCGCGCCCGTAGCTCCGCCACCAGTTCCAAGTCCAGCAACAGTAACTTCCCCCCAGCAGAGCGCATTAAATGCGCAAAATGCAACTGCAGGAACCTCTTCGTCAGTGGCAGTGGGCAGTTCGAAAAGCGTTCCAATTGGCACAGTTCAGCCAAGATTTAAGTCAGCCGAAATGGCAGTATCTACTCAACAAAATCACCCATCGGGATCGGGCGGCGGCGGTGGAGCTCTGACAAGAGTCAATTCAAACTCTTCCCTTTTCTCTGGATCGAATAAATCTCGAGGTCAATCTACTAAGAAGATCAAAGATGACACTCCCATTAAAATGTGCAATAATACAGCGTTCCCCAGACACGATGATCCCACACAAATGGTTGAAGCTCCAATATTCCGGCCAACCGAAAAAGAGTTCCAGGACCCGATAGAGTTCATAGACAGGATTACCCCAATTGCTGCACGCTTTGGAATCTGTAAGATAATCCCGCCAGCGAGCTTCAAACCGGAGTGCCGAGTTTCTGATGATATGCGTTTCACCGCGTACAACCAGTACGTGCATAAAATGCTCCACAGGTGGGGTCCTAGTGCTAAGGAACTTAGTGCAATAAAGAAGTATTTAGCTACACAAAGCATTGTAATGAATCACCCACCATGGATCGGGGGCATGGAGGTCGACTTGCCGCGGCTTTATCACACCGTTCAAGAGTTGGGTGGTCTCAAGGAGgtcattgagaaaaaaaagtggGCTCGTGTGGCTGAGGAAATGTGCATTCCGAAGTTAGCGCAGGATCGCGTAACAAAACTTGATGATATATATTGTAAATATCTACTCCCCTATGATACACTATCGCCCAGTGAAAGGCAAAAACTTTTTGATGAAGTCGAAGCAGACTGGGCAAAACGTGAAGCCAGAGCACGACGAAATGCCGACCGCTTCGTAAATACTGAAAGTGTGAGCAATGAAGATGACGATGTATCAAGTGAAGATGAGGAAGAGTCTGAAGAAGAAATTGATGGAGTATCGATGGAATGTATTGTGAAAGGTCGAAGTATGCCTTTAAGTCAGTTCTTTCGTATTGCTCGAAACACAATGTCCTTATGGTTTAAGAATGCGGAACCTTCTGTAACAGAAGTGGAAGCCGAGTTCTGGCGTCATGTTGCTGTTCGAGACAGTCATGTTTGCGTACATTCCGGTTCAATTGATTCCAGTGGATGGGGATATGGATTTCCGTCGCCTGGACCCAAGGGAAAAGGTTCCGTTTGTGCCCGGCATCCATGGAATCTTAAAGTGTTAACAAACAATGCTGGATCTGTTCTACGATCATTAGGTCCAGTAATGGGAGTGACTGTTCCAACGTTGCATGTGGGTATGCTGTTCAGCGCATGCTGTTGGTATCGTGATCCACATGGACTGTCATGGATTGAGTATCTGCATACAGGTGCAAGTAAATTGTGGTATGGTATTCCTGATGACCAAAGTGCGAATTTCCGAGCCGCTCTTACTTCACTCATTCCGACGCATTGTCAGAATAAAACCATTTGGCTTCCTTGCGACACAGTAATGGTGCCTCCGCATATGCTAACTGATCGTGGAGTTTCATTGTGTCGAATAGAACAGAAACCTGGAGAGTATGTTGTTATCTTTCCTAGAGCATATACGTCAAGTGTTGCCACAGGATACGTAGTCTCCGAGAGCGTATACTTTGCAACAAGCTCATGGCTTGAGCTAGGAAAGGACGACTTCAGGGATATTCATGACAGTTGCGAACCAGCAATGTTTTCGTTAGAACAGTTGCTGTTCGCGTTGGCTTCAGATCAGCGTGTGACAGTTGATGTTCTCTCTCAAATGTTACCAATGATAAATGAGGTATTCGAAAAAGAGGTTGCAGCTCGAGAACAACTAAAGGCAGCAGGGGTAACGTCAACAGAAAAGATTCCTACCGAAAAGACAGCCAAGTCAAAAAAGCACCCCATCGCTTCTCTTCAGCACGAGTGTGACTTGTGCCGAGCAAACATTTATATATCTATGGTTAAAACGGATGAAGGCAGCATATATTGTTTACAGCACGCCCTCAAGAATCTTAACAAAGGCAACATTCAGGCCAAACAATGCAAGCTCATATTTAGCTATAACATTGAAGATATTGATAATCTCATTAAAACGCTGAAGGATCGACTTGCACAAAAACGAACGGCTGCCAATAAGAAATCAAAGTAG
Protein Sequence
MVVSKDSKRKRKESPLIESSPEMPKRTKVQAQRKFAQGQSAPTSSFSSALASSSTATAGGSASLGNASTQENREPPTEILPNKRPKTEDFLTFLCFRGTTALPSHLDFLNQNTSQSSKDDVSKATADEKAKEDDVSEKKLNVQKGTRSKAQKKNEKAPAMDESSLTTSSTKKPETKKSIAKKNEEGKMMTFPVRKRAELLPDGNRRGRPTDKSKEKLNKSAEGSRRSIRNRDVSKSLAEPDDDETETNEVETASVDSGQDGVKKEKNQTPQQKPPKKGKQLNSGKKKQDISVPEVSRPQNSSSQSIEPGNQIKPVPVKEKPLKRPRQKEAPIFVPSPEPTGRMTRQRAFFEPVKVIHRDESEDNTEKKKENIEEKTKSSPVPCATEKDDDNALGKDIFEFSSEDEQPLAKSIKIKNTKATSKKTPVKKKQKAQTAVEVESPSNVDATAQDNTMDKSHNIKDDLELLIPDPVEKNALPEKEEEEKSIPEKVKRSVGRKPKKKVTENQKALPEKPAKTSNEEDTKNVEKVESPESELKSNSTALTSRQKKKASPTATVLRSPNVDVAEPETRNTRPTRKTKEAATIYMGIIGQKLQQDEFEDDELSLNSFPDLPNVKEMEKMETELKKNVDQNKQIPKPKDAGDAVKLEEKPVVKSTEKVPARRGRPPKNQNGKNSKQKPTKPQIEGMLRKREEPKPEEKDEKEDEEDYLISEEVNETKRKLEKSFSDSDDEPLAIKLTKSSEKGSDHSKKSDMAPVIKSPNSKDKCLEDTKISPKMLNILPITSAATCLQAHASASSLMGNVIPDNKAKLDEKPKLPVTLPSPAPPYIPRQPVVKSPQTQPPPIPPLPPTIKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRNIERRIVCLEGSSTLSTMQRPSSSFPSPSPVKFDMSSSRTPSTSNPKIPVIPPTTPSNADRSADPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDNLRPNIYATTPPPTRDDKESTTFSSSSKTTRDLGKSESAWSGKGPSLKATPVVVPKDDQRAEEPEPVSKEPKETAKDYQSQKSSSANKKNDISAKGREKSKIDKAKEEREAKKLQEKPLKEGVTSRGAKVNPAAATASTQRQQKKMDESKNNSVSPQTSKTRESAPAGTPKTPKRTTVYNSKLKETTTTSHKKKAPFTYNFGAFSADNEKSIYSFDKEDDDTKLPVSKPFRRQSRRESHTDEPNQTESLPQKNATGEKKEGNATQTSVSVTLSTEESSKLVKVSLESEQSKPTEVADKSNDFNLGDSDSDIHTFYIPLQGAGVGGIGEGKSDLIQGVAVKLGREGPEGPNQKVVMHATLVTKSQMGSNSKPLPDSMNVSEIVKNLLGSGAINTKDTNAIITAPVAPPPVPSPATVTSPQQSALNAQNATAGTSSSVAVGSSKSVPIGTVQPRFKSAEMAVSTQQNHPSGSGGGGGALTRVNSNSSLFSGSNKSRGQSTKKIKDDTPIKMCNNTAFPRHDDPTQMVEAPIFRPTEKEFQDPIEFIDRITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPSERQKLFDEVEADWAKREARARRNADRFVNTESVSNEDDDVSSEDEEESEEEIDGVSMECIVKGRSMPLSQFFRIARNTMSLWFKNAEPSVTEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSVCARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEYVVIFPRAYTSSVATGYVVSESVYFATSSWLELGKDDFRDIHDSCEPAMFSLEQLLFALASDQRVTVDVLSQMLPMINEVFEKEVAAREQLKAAGVTSTEKIPTEKTAKSKKHPIASLQHECDLCRANIYISMVKTDEGSIYCLQHALKNLNKGNIQAKQCKLIFSYNIEDIDNLIKTLKDRLAQKRTAANKKSK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00672644;
90% Identity
iTF_00672644;
80% Identity
-