Eper002811.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026145.1:100595673-100597148[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.22 6.8e+02 0.3 0.1 22 43 210 231 204 236 0.81 2 7 0.00086 2.7 8.0 0.1 21 51 237 266 231 267 0.89 3 7 0.0017 5.3 7.1 0.3 21 48 292 319 271 323 0.84 4 7 0.0004 1.3 9.1 0.1 21 45 320 344 316 352 0.89 5 7 0.014 45 4.1 0.1 18 47 372 402 362 408 0.81 6 7 0.0016 4.9 7.2 0.1 23 46 434 457 430 463 0.87 7 7 0.0047 15 5.6 0.1 21 48 460 487 457 489 0.89
Sequence Information
- Coding Sequence
- ATGGAATTCTCAGATATGGTCAAGGACGGTACTTGTACATTCTCGGATTGGCcagatgaggatgaggaagaCGACGATGAGCAATACACTGGCATTCTCCTCACAGAGGATATGATCAAGCAAGAGCCAGAATTCATAATTGGATCGGATGAAGCCGAGGAGGAGCAAAAGATCCGTGCCTTCCTAAATAAGGACATCATCGATGATGAGGAGAGACAACAGTTGATCTGGTTCACATGCATGATATGTGATGAACGCTTTTTGTCCACCAAAGATTTGTCGCTGCACGTACAAGAGCACACCAAAACAGCACTCAAAGAGGAAAAGGATGAGATGTTGGCTCCGCCGAGGGAGCTCAGCAATCGTCAGGCCCCGAAAACGCCATACACCGGATTCACCCGACAGGAGCTCTTTCAGGACTACATCAATATTAGCGTGGAACTGGACGGAAAGGCCACGTACACATGCAAGCTGTGCCCCAACAAGGTGTACGCGCGACAAATCTCAATCCGAAATCACATGCGTATCCACGAGAATCCAACGTACAAGGAACGCTCGTGTCATGTCTGCCACAAGACTTTCCTGCGTCGCGATACGCTTCTGGTACACTTGCGCACCCACACCAACGAACGTAAGTACCAGTGCGACATTTGCGATGCAGCCTTTACACATTCCAGTTCGCTAGTGTCCCACAAGCGCATACACAGCGGTGAGAGGCCGTACGTCTGTGATATCTGCGACAAGTCATTCCGCGAGTCTGGCCAGCTATCTGCCCACAAGAGGATTCACTTTGCGAAAATCTTGGAGTGCCCAAAGTGCGACAAGAAATTCACTTCCAACAAAACCCTGCGGGTTCACTGTCGAACGCACACCGACGAGCGTCCATACACGTGCACCTTCTGTTCGAAGATGTTTCGCTGCACCACCAGTCTGACCACTCACCTGCGCGTCCATACAGGTGAGAAGCCGTACAAGTGCGAGATATGCTCATACGCGACCAAGCAGTCGGGGTACCTCCGCACGCACATGCGCACCCACACCGGCGAAAGACCCTTCAAGTGCACCTACTGCGATAAGGCGTTCTCCGAGAAGAAACGGCTTGTCACCCACACCCGGAGTCACACCGGGGAACGCCCATACAAATGTATTTACTGCGATTCGGCATTCGCGCGGACCGACAACCTCAAGTATCACCTGCGAACGCATACCGGCGAAAAACCGTACGAATGCGACGAGTGCGGTAAGCGATTCGCACAGGGCACGACGCTCAGTATTCATCAAAAGATTCACACGGGAGTTAAGCCATATTCTTGCCCACACTGCGCCATGAAATTTCGACAAAGCGGCACCCTGGTCACTCACCTGCTGATGCACACTAACGAACGGCCCTTCAAATGCGATCTCTGTGAGAGGGGCTTCCGCCAGAAAGTGCTGCTAAAGCGACACGTTTCCAATGCCCATGGTAGTGTGATTTAA
- Protein Sequence
- MEFSDMVKDGTCTFSDWPDEDEEDDDEQYTGILLTEDMIKQEPEFIIGSDEAEEEQKIRAFLNKDIIDDEERQQLIWFTCMICDERFLSTKDLSLHVQEHTKTALKEEKDEMLAPPRELSNRQAPKTPYTGFTRQELFQDYINISVELDGKATYTCKLCPNKVYARQISIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRTHTNERKYQCDICDAAFTHSSSLVSHKRIHSGERPYVCDICDKSFRESGQLSAHKRIHFAKILECPKCDKKFTSNKTLRVHCRTHTDERPYTCTFCSKMFRCTTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPFKCTYCDKAFSEKKRLVTHTRSHTGERPYKCIYCDSAFARTDNLKYHLRTHTGEKPYECDECGKRFAQGTTLSIHQKIHTGVKPYSCPHCAMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQKVLLKRHVSNAHGSVI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00672345;
- 80% Identity
- iTF_00672345;