Eper011552.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026149.1:3699289-3702530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.7e-05 0.0038 17.4 1.1 2 23 389 410 388 410 0.97 2 16 2.1e-05 0.0017 18.6 1.4 1 23 416 438 416 438 0.98 3 16 0.00017 0.014 15.7 0.7 1 23 444 467 444 467 0.98 4 16 2.9e-05 0.0024 18.1 3.5 1 23 482 504 482 504 0.98 5 16 0.00054 0.044 14.1 0.5 1 19 538 556 538 560 0.93 6 16 3.5e-05 0.0028 17.8 1.9 1 23 566 588 566 588 0.98 7 16 7e-06 0.00056 20.0 0.9 2 23 705 726 704 726 0.97 8 16 1.5e-06 0.00012 22.1 1.6 1 23 732 754 732 754 0.98 9 16 5.2e-06 0.00042 20.4 0.5 1 23 760 783 760 783 0.98 10 16 9.6e-05 0.0077 16.5 1.8 1 23 794 816 794 816 0.98 11 16 3.9e-06 0.00031 20.9 1.8 1 23 828 850 828 850 0.98 12 16 0.014 1.1 9.7 1.8 1 23 856 878 856 878 0.97 13 16 9.3e-06 0.00075 19.7 0.2 2 23 884 906 883 906 0.96 14 16 0.067 5.4 7.5 0.4 1 23 914 937 914 937 0.94 15 16 0.00073 0.058 13.7 0.2 2 23 946 968 946 968 0.91 16 16 0.00027 0.022 15.1 1.6 2 23 974 995 973 995 0.97
Sequence Information
- Coding Sequence
- ATGTCCGTCAAGGTTGACGACTCCGTGTGCCGAGTGTGCCTAAGCTCATCGGGTAACATATCAATCTTCGATGGATGCGGGAAAGACGACCAATTTCGATACTGCACGTCGTTGGAAGCCGCAAGAGACGATGGACTGCCGTCAAAGTTGTGTAGGAAGTGCAATGATCACCTTAAGGTCGCCTATGACTTTCGCTTTCAGGCGGTTTATGCGGAAAATTATTTCAGAAAGACAATCTTTTTGCCATCGCTGAAGAAGGAGGACGACGCGGGGACGGCGCTCGTGAAAGATGGGCACAGTTGTAGCGATGAACTCGATGAGAAAATGGCCGAGATTAACATGTTGCTGGCGGTGCATACGGACGTCCCAGGTGAGCCTGACGATGACATGAATAGTGCGGGGTTTTACGATGACGAGAGTGCTGACGAAAATGAACCGCAAGTGGAAATCATCGGCATGGAGACATTTGACAAAGAACAGCGGGCGAAGAGGGACGTACATGTGAAGGTGGAGATGGCTAGTGTTCCTGCCCCACTGGTATCGTCTACAACAAGCTACGTTCCACCGATTCCCTTGCCAATGGAATCGCCACAGTCTTCAAATAGCAGCTGTAGCAAGCAACACTCTAGCGTTGGTCTGAACGGGATACAGCAGTATGCTACGTCGAGCCCCTACTCAGAGCATTCTGTACAAGATTTGCGACCAGAACAGGAATGTGGCCGTTCGCTTCAGCTGGAAATAATGCCCGTTCTTAAGAATGACCCCTCTACGTACGACTACAACGCGCCCACGGTTGCGGCGGGAAGTTTTGACACATACAACGCCCCGCCGCAGATGCAATATCAACAGAACTTGCCAATGCACCTGCAATTCGACGTGCCCTCAACAGTCCACCATTCAACGATGCCCGTGCAGGAGACCGCTTCGACCACAAACAACTATGATTACAGTTATCAATCACAGTTCCCGGCATATCCTGGGCAAACAGCTGAGCTCAGACCTGAGTCCAACGTGCCAGTGGTGCCTCAAGAATCAACATCGCAGACGACAACAGTGCCGCAGACAGATGACCAAACGGATGGCATGCCTAAGACGGAAAACCAAGATAACGAGACCAATAAACCGAAGAAAGTGAAACGAGAATCCTACCGCAGGGATAAGATCGAGTGCAATATCTGTGGGAGTGTGTTCACGCATCTAAACTCGCTGAAAACCCATCTCCTCAAACACTCCGGCGAGAAGCCGTTCAAGTGTGAGTTCTGTAACAAGGCGTTCGCTAGGAAGACAGTGCTCAACATCCATCGGCGATTGCATACCGGAGAGAAGCCGTACAAGTGTACGCTTTGCACAAGTGCCTACGTGACTAAGGAAGCCTTAACGCGTCATCTGCAAAAGGACCACGAACAGGAAGTGGGTTCGAATTTCCGAAAGGATAAAGTGTCGTACATCTGTTCCATATGCAACAAGTCCCGCTGCTCGAAGTACTCCCTGGCATCACACATGAAGACTCACTCCAACGATGCTAAGGCCCGCCGCAGAGCTGTGCGAAAGAAGAAGGAGAGGTCGGACAATTCGAGTGGTCCAGTCACAGCAACCAATGTTCCTCTAAAGTACTCGTGCAAGATTTGCCAGAAGGGCTTTCCCAACAAATGGGAGCTGAGCACTCACGATGAGTCGCACGACCAGAACAAAACTTTCGAAtgtgacatctgccagaggacGTTTGAGAAGAAATTCCAGTTGCTGTACCACTTGCAGACGCACGACGGCGGCGAGGAGTTGATAAAGGCGAAGGTTCACACAAGCGGAGAGAGGTCTGCTGCGCAAAAGAGCTCCGATGGCGTGCTGGAAAAGAATGCCAAGACTACAAATGAGAAGAAAGTGAAGCGAAAATTGCCAACTAGAAAACGGCGGAAAAGAAAAGCAAAGGTAGAGCCCGACGCCGACAGCAACGAGGAGCAGGACGACGCAGAAGCTGAAGCCGAAGCTggtgaggatgacgatgaaaacGATAAAGACTACGAAACAGAGGCCCCAGAGAAGAGTACACCGAAGAGGGTGACCAGGGCACAGCGGGAAAACCTGAGGGTACTGCGGGCCAGTAACAAAATTGTGTGTCATATATGCGAAGCTGTGTTTACGCATCCCACGTCGTTGAAGACGCATATGCTGGTGCACTCGGGCGAACGTCCGTTCAAGTGCGATTACTGTGATAAGTCATTTGCGAGAAAGACCGTCCTCAACATCCATCGAAGACTGCACACGGGCGAGAAGCCTTACAAGTGTCCGCTGTGCGACATTGCCTGCGTCACCAAAGACGCACTCATGCGGCACATGTCGAAAGATCATGACGACGACAAGGAAGCTGATCGAATAAAGTTCACTTGCGGAATATGCCACAAGTCAATGGGTACCAAGTATTCACTGCAGGCCCACATGAAGCTGCACGAGCAGTACTCCGCAGCGGACGCAGAGGTGAGATTTTCCTGCAACACGTGCACGGAGTCGTTTGATTCCAAATCGGAGTACACGAAGCACATGCAGGTGCACGACTCGCATCGGAACTTCCAGTGCGACATCTGTCAGGCGACGTTCGAAAAGAAGTTCAAGTTGCTCTTTCACTTGCAGACACATAAAATCGAGGATCTGCCATGCAAAAAGTGCGGTGAAACCTTCACAATCAGGGAAAACCTCATTCAGCACATAAAAGTGCAGCACATGGATCCTCAAAATATGGACTTCCAATGCCCGAACTGCAACGTCAGACAGTACGACACCCGCGATCTCAAGCTGCACATGCTGAACGTTCACGAAATCAACATGGGGGGTTTGAATTCGTGTGAACTGTGCGGAGAGACCTACTCCACGGCGGCGGAGTACTACAAGCACATGTACGACAAGCATGACACAATTAGCAAAACATGCAACGAGTGCGACAAGTACTTCGACTCGAGGAAAGCCTTCGACAAGCACTTACTAACACACTACATGTAA
- Protein Sequence
- MSVKVDDSVCRVCLSSSGNISIFDGCGKDDQFRYCTSLEAARDDGLPSKLCRKCNDHLKVAYDFRFQAVYAENYFRKTIFLPSLKKEDDAGTALVKDGHSCSDELDEKMAEINMLLAVHTDVPGEPDDDMNSAGFYDDESADENEPQVEIIGMETFDKEQRAKRDVHVKVEMASVPAPLVSSTTSYVPPIPLPMESPQSSNSSCSKQHSSVGLNGIQQYATSSPYSEHSVQDLRPEQECGRSLQLEIMPVLKNDPSTYDYNAPTVAAGSFDTYNAPPQMQYQQNLPMHLQFDVPSTVHHSTMPVQETASTTNNYDYSYQSQFPAYPGQTAELRPESNVPVVPQESTSQTTTVPQTDDQTDGMPKTENQDNETNKPKKVKRESYRRDKIECNICGSVFTHLNSLKTHLLKHSGEKPFKCEFCNKAFARKTVLNIHRRLHTGEKPYKCTLCTSAYVTKEALTRHLQKDHEQEVGSNFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDAKARRRAVRKKKERSDNSSGPVTATNVPLKYSCKICQKGFPNKWELSTHDESHDQNKTFECDICQRTFEKKFQLLYHLQTHDGGEELIKAKVHTSGERSAAQKSSDGVLEKNAKTTNEKKVKRKLPTRKRRKRKAKVEPDADSNEEQDDAEAEAEAGEDDDENDKDYETEAPEKSTPKRVTRAQRENLRVLRASNKIVCHICEAVFTHPTSLKTHMLVHSGERPFKCDYCDKSFARKTVLNIHRRLHTGEKPYKCPLCDIACVTKDALMRHMSKDHDDDKEADRIKFTCGICHKSMGTKYSLQAHMKLHEQYSAADAEVRFSCNTCTESFDSKSEYTKHMQVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKVQHMDPQNMDFQCPNCNVRQYDTRDLKLHMLNVHEINMGGLNSCELCGETYSTAAEYYKHMYDKHDTISKTCNECDKYFDSRKAFDKHLLTHYM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00672976;
- 90% Identity
- -
- 80% Identity
- -