Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.5e-13 7e-10 38.3 0.1 4 38 138 173 135 179 0.89

2 3 0.11 1.7e+02 1.9 0.0 18 37 199 218 194 224 0.80

3 3 1.2e-09 1.9e-06 27.3 0.0 6 38 250 282 246 287 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.5e-13	7e-10	38.3	0.1	4	38	138	173	135	179	0.89
2	3	0.11	1.7e+02	1.9	0.0	18	37	199	218	194	224	0.80
3	3	1.2e-09	1.9e-06	27.3	0.0	6	38	250	282	246	287	0.85

Coding Sequence: ATGTTCACGAAGTCTCTAGACATTCCCTGCCTCTCACCCGGCGCGGCGGTGAACGAAATAGAATGCGTTGACACCGCCGAAATTGATATAAAGCCCGCCAAAGTGACCTTGATGCCGGTGGTGGCGCCTGTTGAGTCGGCACTGGCCACTGCATCGACGACTGAGCAATTCGTCATTTTCGAACTGAAGACTGACGCAGAACCAATGTACAATTATGTCATAAAGCACGTAAAGAAACCTCCGCTGGAGGACGAGGACACATCGCAGACGATATCCTCCGAGAGTAGTGAACCTCAGCAGGTTGAGGAGACAGTGGAAAAAGAAACGGCCCCTTGTGTAGCTAGCGTGCCATGTGATGAAGAAGAGACTAAAGAGAATTCGCCGAAAACGCAGCGAGCACTCAACCGAAAGCGGCTGGCCGAAGCTCTGGAAGCAGTGGTCAGCAGGCAGCTGACCATCAGCAAGGCGGCCAGTGTCTACCAAGTAACGAAGAGCACCCTCTGGAAGGAGGTTAACAAGTGCACAAGCCACCGCCGGAAGATCGTGGATGAAGAGCTAAATCGTAAGATCGCAAAGCGAATCTGCGCCGGCGAGTCACTGTCGAAGATTTCGAGGACACTCAAAGTGGCCAAGTCCACACTGCATCAGCATAAGGTTCGACTGGCTCACAGCGGCCAATTGCCGGCGAATGTAACACTCAAGCCACCCGTCGATCCTGCGGAGAGACTTGCTGTCAAAGAGCGTGTCATCGAAGCATTCCGCGGCTGTCGCGTGAACGGCATGTCGATACGTCTGGCGGCGAAGTTCTTCTCAATACCTCCCACAACCCTGTGGAGACACATTAAGCAATACAAAGCGTTGCACCAACCGCCGGTGGTGAGTGATGTAACCGTTCAAAATTCACCGGAAGTGGCGGAAGAGACTGACGCTGAAACGCACTCAATGAACCAAGAATCCAGCGACGAGGATGACACGAGTTCACATGAATCCGACACGAGGACCGAAGGCGATACCAGTGAAGTTGACGATTTCTTGATAAGTTTTGACTTCGATACGTTCGAGCAATATGTTAAGAAAGAGCTAGAGAGGTAG
Protein Sequence: MFTKSLDIPCLSPGAAVNEIECVDTAEIDIKPAKVTLMPVVAPVESALATASTTEQFVIFELKTDAEPMYNYVIKHVKKPPLEDEDTSQTISSESSEPQQVEETVEKETAPCVASVPCDEEETKENSPKTQRALNRKRLAEALEAVVSRQLTISKAASVYQVTKSTLWKEVNKCTSHRRKIVDEELNRKIAKRICAGESLSKISRTLKVAKSTLHQHKVRLAHSGQLPANVTLKPPVDPAERLAVKERVIEAFRGCRVNGMSIRLAAKFFSIPPTTLWRHIKQYKALHQPPVVSDVTVQNSPEVAEETDAETHSMNQESSDEDDTSSHESDTRTEGDTSEVDDFLISFDFDTFEQYVKKELER*

Sequence clustering based on sequence similarity using MMseqs2