Basic Information

Gene Symbol
stc
Assembly
GCA_955652365.1
Location
OY019133.1:76098409-76101759[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.9e+04 -4.1 1.6 15 19 382 386 381 386 0.81
2 13 0.057 8.4e+02 0.8 0.2 4 10 415 421 414 422 0.95
3 13 5.8e-07 0.0085 16.8 15.1 1 19 427 444 427 444 0.93
4 13 1e-06 0.015 16.0 13.1 3 18 482 497 480 498 0.91
5 13 0.81 1.2e+04 -2.9 1.4 8 13 503 508 502 509 0.79
6 13 1.3e-07 0.0018 18.9 18.6 1 19 538 556 538 556 0.98
7 13 5.9e-05 0.87 10.4 16.3 4 18 604 618 597 619 0.86
8 13 0.044 6.3e+02 1.2 12.0 1 11 659 669 659 681 0.91
9 13 4.7e-10 6.9e-06 26.7 15.5 1 18 686 703 686 704 0.97
10 13 0.64 9.3e+03 -2.5 0.3 6 10 733 737 732 741 0.83
11 13 2 2.9e+04 -7.1 16.9 9 18 750 760 737 761 0.81
12 13 3.2e-08 0.00047 20.8 14.5 1 16 797 812 797 822 0.88
13 13 7.2e-07 0.011 16.5 13.2 1 18 829 847 829 848 0.93

Sequence Information

Coding Sequence
atgtcagaCGCATTTCATCGATACCACGAGGGAGCAGGAGGAAGTGGCGGAGGTGGCAGTGCAACCAACAACAATTATGTAAACTTCAATCAGTTCATAATGCAGCACAACATcattggcggcggcggcggtggaagTAGAGGTGGCGACGGAGGAGTTGATGCGTTGATGACTTCTTCATCGAATCCATTTCAGTACAACGGAAGCTATGGACACCAATACCAAATGGACGACTATTATTTTTCCGGCAGCAATGGGAGAACCACAAATGGAGGAGACGGTGGTCTATATAGTAATTATCAAGCACCCATTAACTACACTGATTCAACACTGCACGCGACAGCGACTGAATTTATACCAAGATTTTCCAATACTCCTTTGAATAAGACTACGACGGGGAGTGGGAAGGCAAACGATGGTCTTCAAGCAACTGCGAGCGAATTTATACCAAGGTTCTCTAATATTTCACTGAACGAGACTGATGGAAAGGCAAAGGACGTCCTGCACGCATCTGCGACCGAGTTCGTACCAAGATTCTCCAAAATTTCACTCGCAAACGATGCTGCAGACAATCTATCAGCATCGGACATTCAAAATGCGAACATCAATGGAACTCTGGGTCCGTCGACAAGTCGATCATCTCTTCAACACAACAATGCAGGCTCGCCTACCAACAAGTCCCCGCCGCAGCGGTACACAGGTGCGACTAGCAAGAACCGTGCGTCAACATCTCGCGGCAGCGCTTCGAATGGGCCTGCATCTTCACGGCGACAGAATGGTCGCGAGTATCACCGTAACCAACGATACGATAATCATCGAAGTAACAAACGCAGGGATGATTGGAACCGCAACCGGGATCGTTTGACGGCGTTCAGGGAGGAAAAGTACACTGTAGAAAATGGAAAGGACAGTCCGCAGAACTCTCCTGAGAAGAAATCACCGAAAAAGCCTAACCCCGAAAAATTGTCGCAAAGAGAGAAGCTTATTCGAGAGATCGAAGCCAGGCGTCTAGAGTGCTTAGTGTGTGTGGAACAAATCAAAGCCCACAACTCGGTTTGGTCATGTCACAATTGCTACCACATTCTCCACTTGAGTTGCATAATCAAGTGGGCTTCCAGTTCGAAGTCTCAAGACGGTTGGCGGTGTCCGGCGTGCCAGAATGTCGAGAAGGAAGTGCCACGGGAGTACTACTGCTTCTGCGGTAAAGTGAAGAATCCGCAGTTCAATCGGAACGATATTGCGCACAGTTGTGGAGAAGTTTGCGGTCGAATCGAAGGATGTTCGCACGCTTGCACATTGCTATGCCATCCGGGCCCTTGCCCCCCGTGCCAGGCGTTCGTTACACGTGAGTGCGGATGTGGCAAgaccaccaagacaatgcagtgCTATTTGAAAGAGTCCATTGCGTGCGATTCGAAGTGCTTAAAGTTGCTTAATTGTGAGTTGCATGAGTGCGAGGAAAAATGCCACGACGGCAAGTGCAAGCCTTGTGAGCAGAAGGTTGATCAGAAGTGTCACTGTGGAAAACAGGAGCGACAAGTCGTATGCACAAGGGATTCTCACGATAAAAAGACATATTCCTGTGGAAAACCCTGTGGCAAAGATTTGAGCTGTGGAAATCACAAATGCAAGGACTGCTGTCACGCCGGAGAGTGTAGACCTTGCAAAGCGAGCCCGGAAATGGTGACTTCTTGTCCCTGTGGCAAGATGCCAGTAGTCTTAGAGCAGAGAAAGTCTTGCTTAGATCCAATCCCTGTATGCGATGGAATCTGCAACAAGACCCTGCGTTGCGGAAAAGCAGCTCATCCTCATCACTGCACAAGCAAGTGCCACCTCGGCAACTGTCCACCATGCAACAAACAAACTGCAGTGAAGTGCCGCTGCGGGCACATGGATCAGATGATCAAATGTCGACAGCTATCCACAAGAGCCGACGACGCGCGGTGTAAAAAACGCTGCGTAAAGAAGCGGTCGTGCGGCAAGCACAAGTGCAGCCAGGAATGCTGCATCGACATCGACCACATCTGCCCCATGCCCTGCAACTACACGCTCTCATGTGGCAAGCACAAGTGTGATCAACCTTGTCATCGGGGCAACTGTCCTCCTTGCTACCGCAGCTCTTTCGAGGAGCTGTACTGCGAGTGTGGAGCTGAAGTAATATATCCTCCAGTGCCATGCGGCACAAAGCGACCAGCATGCAAGCGGCCTTGCTCACGTCAGCATCCCTGTGACCATCCAGTTCAGCACAACTGCCACTCTGGACCCAGTTGCCCACCGTGTATGATGTTTACCACAAAGTGGTGCTTCGGACAGCACGAGCAGAGAAAAACCATTCCATGTAGCCAGGAGAGCTTCAGTTGCGGCCTGGCTTGCAACAAGCCGCTTAGCTGCGGGCGGCACAAGTGCATCAAGCCATGTCACGAGGGACCTTGTCAAGTGGCTGGAGAGGTCTGTAAACAAAGCTGTTCAACTGTGAGGCCAACATGCGGGCACAAGTGTATGGCTCCGTGTCATGACGGGGAATGCCCTGAAACGTCCTGTAAAGAGATGGTGGAGCTGTCCTGCGAGTGTGGCAACCGGAAACAGATGCGAGCCTGTCACGATTTCGCTAGAGAGTACCGTCGCATTGCTATGGCCCAGTTGGCGTCATCCATGCAAGAAGTTCAGCGCGGCAACCAAATCGAGCTGAGTGACATTCTGGGTCCGGTCAaaatgaacaacaacaaaactCTGGAATGCAACGACGAATGCCGTACGTTGGAACGCAATCGTCGCCTGGCTATCGGCCTCCAAATTCGTAATCCTGATCTGCCACAGAAGCTACTTACCAAATACTCCGATTTTATTCGAGGTTACGCGAAGAAGGATCCCACTCTAGTGAAGAACATCCACGAGACTCTCACGAACCTGGTCAAACTGGCCAAGGAAAGCAAGCAGAAGTCACGCAGTCACTCTTTTCCTACAATGAATCGCGAGAAGCGCCAACTCGTCCACGAAATGTGTGAAATGTTCGGGGTGGAGTCCGTGGCCTATGACGCCGAACCCAATCGGAATGTAGTTGCAACTGCTTACAAGGAAAAGTCTTGGTTGCCCGCGCAGAGCATAATGGAGGTGCTACAACGCGAGAGTGGCCAGCGCCGCGTACCAGTGCCAAGCAACAACGCATGGGGCGTCAAGAGATAG
Protein Sequence
MSDAFHRYHEGAGGSGGGGSATNNNYVNFNQFIMQHNIIGGGGGGSRGGDGGVDALMTSSSNPFQYNGSYGHQYQMDDYYFSGSNGRTTNGGDGGLYSNYQAPINYTDSTLHATATEFIPRFSNTPLNKTTTGSGKANDGLQATASEFIPRFSNISLNETDGKAKDVLHASATEFVPRFSKISLANDAADNLSASDIQNANINGTLGPSTSRSSLQHNNAGSPTNKSPPQRYTGATSKNRASTSRGSASNGPASSRRQNGREYHRNQRYDNHRSNKRRDDWNRNRDRLTAFREEKYTVENGKDSPQNSPEKKSPKKPNPEKLSQREKLIREIEARRLECLVCVEQIKAHNSVWSCHNCYHILHLSCIIKWASSSKSQDGWRCPACQNVEKEVPREYYCFCGKVKNPQFNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQAFVTRECGCGKTTKTMQCYLKESIACDSKCLKLLNCELHECEEKCHDGKCKPCEQKVDQKCHCGKQERQVVCTRDSHDKKTYSCGKPCGKDLSCGNHKCKDCCHAGECRPCKASPEMVTSCPCGKMPVVLEQRKSCLDPIPVCDGICNKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCSQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPACKRPCSRQHPCDHPVQHNCHSGPSCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLSCGRHKCIKPCHEGPCQVAGEVCKQSCSTVRPTCGHKCMAPCHDGECPETSCKEMVELSCECGNRKQMRACHDFAREYRRIAMAQLASSMQEVQRGNQIELSDILGPVKMNNNKTLECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPTLVKNIHETLTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMEVLQRESGQRRVPVPSNNAWGVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542617;
90% Identity
iTF_00671896;
80% Identity
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