Elan011616.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- ham
- Assembly
- GCA_013282895.1
- Location
- scaffold:2199371-2200129[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0018 10 7.0 0.1 26 45 44 63 42 66 0.91 2 3 0.00072 4 8.2 0.6 21 45 67 91 63 96 0.89 3 3 8.8e-06 0.049 14.4 0.2 20 45 95 120 90 128 0.87
Sequence Information
- Coding Sequence
- ATGATTGGGTTATTTCGGGTTATTGTTGGCTGCGGCTTGTGCCCCGAAACACGTGTTGAGACCATAATAATAACATTATTTCAAATCCACAATAAACAGATGTTTTCATTACATTTCTGCTACAGGTACTCGTGCAAGTTCTGTCAGAAAGTGTTCCCGCGCAGCGCAAACCTGACCAGGCATCTTCGGACGCACACGGGCGAGCAGCCGTACAAGTGCAACTATTGCGAACGGTCGTTCAGCATATCGTCCAATCTGCAACGTCACGTGCGCAACATCCACAACAAGGAGAAACCGTTCAAGTGCCCGTTGTGCGAACGGTGTTTCGGGCAGCAGACCAACCTGGACCGACACCTGAAGAAACACGAGGCCGACGGTCCGACGATAATGGACGACCGTCTGTCGTCGTCCTCGTCGACCGTCGCCGCGGCGGCCGCGGCCGAGCACCGGCGGTCGGCTGCGGGCCGCGCGGGCGACGATTCCTATTTCGAGGAGATCCGATCGTTCATGGGCAAAGTGAGCGAGGACGGCAGCCGGTTCGCAGTGGCCGCCGCGGCCGCCGCAGCCGCGGCGGCGATCGCGTCGTCCGCCGGCAACCACCGCGCCGGCGGTCGCCACCAGTCGGCCGGCGGCCGTCGGCAGACCGCGTCCGCCGGACAGCGGTACTCGTCCAGGTCGTCCGCCTCGTCGGCCGGTTCGACGGAATCGCGGTCGTCTTCGGGGCCGGCCGACCACAAGGAGTGCGCCAACAACACCTGA
- Protein Sequence
- MIGLFRVIVGCGLCPETRVETIIITLFQIHNKQMFSLHFCYRYSCKFCQKVFPRSANLTRHLRTHTGEQPYKCNYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADGPTIMDDRLSSSSSTVAAAAAAEHRRSAAGRAGDDSYFEEIRSFMGKVSEDGSRFAVAAAAAAAAAAIASSAGNHRAGGRHQSAGGRRQTASAGQRYSSRSSASSAGSTESRSSSGPADHKECANNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00670404;
- 90% Identity
- iTF_00670404;
- 80% Identity
- iTF_00670404;