Elan013429.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:24259177-24266918[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00058 3.2 8.5 0.1 22 45 145 168 141 171 0.91 2 10 0.0026 14 6.5 0.0 22 44 173 195 168 199 0.85 3 10 0.00025 1.4 9.7 0.0 21 50 200 229 196 233 0.85 4 10 0.043 2.4e+02 2.6 0.0 21 48 228 255 226 260 0.83 5 10 0.074 4.1e+02 1.8 0.1 22 46 257 281 252 288 0.81 6 10 0.036 2e+02 2.8 0.0 21 45 284 308 273 314 0.86 7 10 0.0042 23 5.8 0.1 26 44 317 335 310 339 0.88 8 10 0.00025 1.4 9.7 0.1 21 48 340 367 335 372 0.86 9 10 0.018 99 3.8 0.0 21 51 368 398 364 400 0.85 10 10 0.032 1.8e+02 3.0 0.1 22 49 397 424 393 429 0.83
Sequence Information
- Coding Sequence
- ATGGCCGACGAAGGTGACATGTGTATTTTAACACTTGTAAAAAAAGAAATTAAAAAGCGTAAGAGACTCAAAGATTTTTGGAGTTCTAAGGGAGGTTTTTTAGTGGACTTTAAGGAAAAAGAGAGAACTGAGGAAGAAGATACTCAAAATATGATACTGCCACAACAATCAATGAAACATAACCAAGAAGTCTCACATGAACTTAACCAGCACGGCGACAATGAAAATGATGAAGACATTCAAAATACAATACCGCCACAAGAATTAATGAAACATAATCAACAAATCTCAAATGTGCCTAATAAGTTCTACGACAATGAAAGTCATTTAAATAATAATGTTGAATATATCACTCTTCTCTCATGTGATATATATGAGGAATCATCTAAAACAAAATCTAGTTTGACCGAGCATGAGAATATTCACGTTGAAGAACAACCCTATTGCTGTAATTTATGTGGAAACTATTTTTCACAATCGAGCGATTTAAAAAAACATTATAGAATACATACCGAGGAAAAATCTTATGGGTGTAATGTATGTGGAAAATTTTTTAGACAGTCGAGCAATTTAACTGTACATTATAGAATACATACTGAGGAAAAACCATATGGGTGTAATATATGTGGAAAATATTTTAGACAATCAAACACATTAAATGAACATTATAGAATACATACTGGGGAAAAACCCTATGGGTGTGATATATGTGGAAAACATTTTGCACACTCGAGCACGTTAACTAAACATTATAGAATACACACCGACAAAAAACCTTACAAGTGTAGTATATGTGGAAAACATTTTAGACAGTTAGGCACTTTAAATGTACATTATAGAGTACATACCGGGGAAAAACCATATGGGTGTGATATATGTGAAAAATATTTTGCACACTCGAGCACGTTAACTAAACATTATACAATACATTCCGACAAAAAACTTTACGAATGCAATATATGTGGAAAATATTTTAGACAGTCAGGCAATTTAAATGTACATTATAGAGTACATACCGGGGAAAAGCCATATGGGTGTAATATATGTGGAAAATATTTTAGACAATCAAACACATTAAATGAACATTATAGAATACATACTGGGGAAAAACCCTATGGGTGTGATATATGTGAAAAATATTTTGCACACTCAAGCACGTTAACTAAACATTATAAAATACATACCGACAAAAAACCTTACAAGTGTAATATATGTGAAAAAAATTTTGCACAGTCCAGCACATTAAATGTACATTATAGAATACATACAGGGAAAAAACCTTACCAATGTGGTATTTGTCTTAAGGAATTTACATACGGTGCAAATTACTTTAAACATAATCAAACTTGCACAATACAAGATATATTTAATTATTATTAA
- Protein Sequence
- MADEGDMCILTLVKKEIKKRKRLKDFWSSKGGFLVDFKEKERTEEEDTQNMILPQQSMKHNQEVSHELNQHGDNENDEDIQNTIPPQELMKHNQQISNVPNKFYDNESHLNNNVEYITLLSCDIYEESSKTKSSLTEHENIHVEEQPYCCNLCGNYFSQSSDLKKHYRIHTEEKSYGCNVCGKFFRQSSNLTVHYRIHTEEKPYGCNICGKYFRQSNTLNEHYRIHTGEKPYGCDICGKHFAHSSTLTKHYRIHTDKKPYKCSICGKHFRQLGTLNVHYRVHTGEKPYGCDICEKYFAHSSTLTKHYTIHSDKKLYECNICGKYFRQSGNLNVHYRVHTGEKPYGCNICGKYFRQSNTLNEHYRIHTGEKPYGCDICEKYFAHSSTLTKHYKIHTDKKPYKCNICEKNFAQSSTLNVHYRIHTGKKPYQCGICLKEFTYGANYFKHNQTCTIQDIFNYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00670413;
- 90% Identity
- iTF_00670413;
- 80% Identity
- iTF_00670413;