Elan014079.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:24221085-24222376[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00016 0.91 10.3 0.0 20 52 73 105 65 107 0.86 2 8 0.058 3.3e+02 2.1 0.1 21 44 102 125 98 133 0.79 3 8 0.00012 0.66 10.8 0.0 18 52 126 161 122 163 0.82 4 8 0.2 1.1e+03 0.4 0.1 21 39 158 176 154 184 0.73 5 8 0.00014 0.81 10.5 0.0 21 49 186 214 178 218 0.84 6 8 0.059 3.3e+02 2.1 0.0 21 44 214 237 210 241 0.87 7 8 2.4e-05 0.13 13.0 0.0 21 52 242 273 237 275 0.87 8 8 0.28 1.5e+03 -0.0 0.2 21 44 270 293 266 298 0.77
Sequence Information
- Coding Sequence
- ATGGGATTTAGTTCACACGTCAACAACAGTGATATAAAAATAACGTCACCAAAAGGGGAAGACACTCGAACAACACCACCACAGCAACCAATGAATCACAATCGACAAATCCTCAATGAATCTCACCAGGTTGGAGATAAGGAAAGTTGTGTAAACAATATTGTTGAACTTAAAAATTATTCGAACAAATGTTTGACCAAGCATAAGAATATTGACACTGGAGAACGACCTTATGGCTGTGATATATGTGGAAAATATTTTACACAATCGAGCGATTTAAAAAAACATTATAGAATACATACTGGGGAAAAACCTTATGTGTGTGATATATGTGGAAATTATTTTTCACGTTCGGACCATTTAAATATACATTCTAGAATACATAGTGGGGAAAAACCATATGGGTGTGATATATGTGGAAAATATTTTACACAATCGAGCGATTTAAAAAAACATTATAGAATACATACCGGGGAAAAGCCATATATGTGTGATATATGTGGAAAATATTTTACACTATCCAGCCATTTAAATGTACATTCTAGAATACATACCGGAGAAAAACCATATGGGTGTAATATATGTGGAAATTATTTTACACAATCGAGCGATTTAAAAAAACATTATAGAATACATACTGGAGAAAAACCTTACGAGTGTAATGTATGTGGAAAATATTTTACACTATCGAGCAATTTAAATGTACATTATAGAATACATACTGGGGAAAAACCATATGGGTGTAATATATGTGGAAAATCTTATATGCAATCTAGGGATTTAAAAAAACATTATAGAGTTCATACTGAGGAAAAACCTTATGTGTGTAATTTATGTGGAAAATCGTTTACATGTTCTAATAGTTGTTTAAGACATGTGCGAAATGTACACAACAAAAACTCTTTTTAA
- Protein Sequence
- MGFSSHVNNSDIKITSPKGEDTRTTPPQQPMNHNRQILNESHQVGDKESCVNNIVELKNYSNKCLTKHKNIDTGERPYGCDICGKYFTQSSDLKKHYRIHTGEKPYVCDICGNYFSRSDHLNIHSRIHSGEKPYGCDICGKYFTQSSDLKKHYRIHTGEKPYMCDICGKYFTLSSHLNVHSRIHTGEKPYGCNICGNYFTQSSDLKKHYRIHTGEKPYECNVCGKYFTLSSNLNVHYRIHTGEKPYGCNICGKSYMQSRDLKKHYRVHTEEKPYVCNLCGKSFTCSNSCLRHVRNVHNKNSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00670423;
- 90% Identity
- iTF_00670423;
- 80% Identity
- iTF_00670423;