Elan018643.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:33297086-33309002[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-13 2.2e-09 37.4 0.0 9 72 150 219 144 222 0.92 2 3 0.086 4.8e+02 1.1 0.0 29 58 351 380 311 396 0.76 3 3 1.2 6.9e+03 -2.6 0.0 53 73 635 655 631 657 0.82
Sequence Information
- Coding Sequence
- ATGAAACAAATGAAAAAAATGAGTTCTACTAGATTAAAAGAATCAGTTAGTCTTTTAAAATCGGAAGACAATTTTACTGGATTTGAGGTCAATGATGATTTATTGGAAATTATTGTACACAAGCAACAATCTATAGCAAAGGAACTTGATAAAGAAAGAGACACATCTATGAAAATAGATGACCAGCCAGAGTGCTCCTCACCTATTATTAATAATACTTTGTCAAAAAAAAATCTGATATCCTCACTGGAAGCTACTGATACTAAGCCAAGCCGAAATGTTAATAAAAGACTCAAAAAGGAACATTTACAGAATGAAGCAATAGACTCAGAAATTGAACCTATTTTAGAATTTTCAACACCAACATTTAGTCTTACTTCTACACCTAAAACTCGTCGCAGTTCTGCGCGTAAAGTAAATATTGATATCACTGATCCAATATTTAAACTTCCATTTGAACATGGATGGAAACGAGAATTAGTATACAGAACTTCAGGTGATTCTACAACTATTAATCGAAATAATAGAAATGGTGATGTGTATTATTATTCTCCAAATAATCGAAAGCTGCGATCATTAAGAGAAATTCAAGAACAATTGGATATATATTTACTTGATACTCCTTTAACCATAGAAAGCTTTACATTTTTAAAACAACCTATTGGCATGGATGACAAAAAGAAAGAAATAATTAGAGATGCAAATACTAAATTATCAAAGGAAGACTCCTTTATTGGTTTTACTTTTAAATCTAAAAAAGCAAAATCGCCAACTCCAGTACAACATGATTATGAATTATCGGACAATGAAAATAACAAGTCTTCAAATAAACTTAAAATTGTTTTTAAAGATAGCAAGCAGTCAAAATCAAAGTCTAAAAAAAATAGCAAAAGTAATTTAGATGATACAAAAAAACATATATATGCAGATATTACACCTGAGGACTGGCAAGTTACTCAAACTAATCTATCTAATAAATCACCAAAAATATCCCCTTTAAAATCTGATGATATTGAAACAAATGTTACAGACAATAGACGGTTATCAACATCGGATGGAGAAGTTATCATGCAGGCCCCATGTGGGATACGTTGTCCTAACACTGATGAACCTGCAACTTTAATGTGTGCTCAATGTCTGGTCCATTATCATCCAGCATGTGTCAATTTAAATGCTAATCTAAAAATTGTTGGTTATGTATGTGTAAATTGTCGATCATCTATACGACATAGAAATAGACGTGCACAATCATCTCATACTGTAGTTGTTGGTGTTTCTGAACCAGAACAACGTGTTGAACCGATTCGTATACGACAAGTACATCAAGAATCAGATACGCCTAATTTCTTTATTGATAAAAAACCAATTTCCAAAACTGAAGAACTAAATTATGAAATTAATCAAACTATTGATGAAAATAACTCTATTATAAATACAGCTACTTGCCAAGGGAAGGATTATAAAACAGTAATGGTTGAGGGTATTTTTCAGGAACAATATGTTTATGAAATGAAACAAACGCGAGGTCCTAGTTTGATGATTTGCGTTGTTCAAGAGCCTAAAGATTTGGATGAACATTTTGAAATGAATGGTTCTTTATGTGAAATTGCTACTCATATGCAATCATTTAATTACTTCGTAAAATCAATGGGACATGTCTTTAGCTTTTTAAATATAAAAGAGCTTTTATCTGCATCAAGAGTGTGTACTGCTTGGAATGTGATTGCAATGAATAAAAACTTATGGCAAAATGTTCGTTTGAAAAATTCTATGGTTTATGACTGGGACAAATTTGTAACTTGTATTGTTAAACAATGTTCAATTTCATTAGATACTAAGCGTATGTTGATTCCTTTAAGTACCCAAGAGTACCTAGAGTTTTGGTTCAGTTTCGCTAAAGCAATAAAAAATGCAAAACAATTGAAATCCATTGAATTATACAGATGTCCATTCCATGTAGTTGAAGATGTTATTTACTCATTACCCGAACTTAAAATACTAAATGCTTCATCAATAAAAAATCCAAATATATCAAGAGGAGAGGCAAAATATGAATTTATGCCATTGAATTTGGGTTATTTGGGTAATTCTAAAGACCTTACTGAGTTACGGCTAAAGGGTTTAACCGGAATAAAATTAATGATGTTGCCATCTTTTGAAAAATTAATCAATTTAAAAATTTTGTCAATTACCTCTATTAAGGCATTTCCTAAAGACTTATGTCCTATGTTAGAAACTGTAACAACAGGATTAGAGGTTCTAGAGATTGGCGACTGTGATTGTTTATCCAAAGAGTTTGCTGTGTCATTAAAAAGATTTATTAATTTGACTACCTTGCGATTAGAAAATTGCTGTGGTAGATGGGAAAATTTTGCAGAAGATGTTTTTAAAGCTATTATAAGTCTTGAAAAGCTTAGAATTTTAGAGTTGGTAAATATAGAATTCTCTTCTAGTGTAGAAGAAGGATTGGAAAAATGTGTTGGTGTTAGATCTTTGCTGATTATTCCTGCATATGTTAGTCAATCTGCAACTACCAACTGTCATTTGATTGAATGCCTTCAAAAATTATCTAAAACCTTAACTCATTTGGTATGGGGTTTAACAAACGAGTTACTCCGTGTAACAGACTTATTTATTACTCAATATCAACAAAATCAGCATAGTATTGGTTACAACTTAGAACTGTCACAGTCAACTCTCCCCTCTAATAATATACCTATACTGAGAACAAGAAAACTAAAACAACGAACTACCGGAACAGAACCAACATCAGATGATGATCAATGTTCTGTATCAGATAATGTTGATATACTTTCAGTTCCAGCACTTGAAAAATTATTAAGCACAATGATGCCAAATGCCAAGACTAAAGTGTATAAAGTTCCGTTTGTAGGAACAACTCGAGTTTTTTTAAGTGAACATTTTAATGATCTTTAA
- Protein Sequence
- MKQMKKMSSTRLKESVSLLKSEDNFTGFEVNDDLLEIIVHKQQSIAKELDKERDTSMKIDDQPECSSPIINNTLSKKNLISSLEATDTKPSRNVNKRLKKEHLQNEAIDSEIEPILEFSTPTFSLTSTPKTRRSSARKVNIDITDPIFKLPFEHGWKRELVYRTSGDSTTINRNNRNGDVYYYSPNNRKLRSLREIQEQLDIYLLDTPLTIESFTFLKQPIGMDDKKKEIIRDANTKLSKEDSFIGFTFKSKKAKSPTPVQHDYELSDNENNKSSNKLKIVFKDSKQSKSKSKKNSKSNLDDTKKHIYADITPEDWQVTQTNLSNKSPKISPLKSDDIETNVTDNRRLSTSDGEVIMQAPCGIRCPNTDEPATLMCAQCLVHYHPACVNLNANLKIVGYVCVNCRSSIRHRNRRAQSSHTVVVGVSEPEQRVEPIRIRQVHQESDTPNFFIDKKPISKTEELNYEINQTIDENNSIINTATCQGKDYKTVMVEGIFQEQYVYEMKQTRGPSLMICVVQEPKDLDEHFEMNGSLCEIATHMQSFNYFVKSMGHVFSFLNIKELLSASRVCTAWNVIAMNKNLWQNVRLKNSMVYDWDKFVTCIVKQCSISLDTKRMLIPLSTQEYLEFWFSFAKAIKNAKQLKSIELYRCPFHVVEDVIYSLPELKILNASSIKNPNISRGEAKYEFMPLNLGYLGNSKDLTELRLKGLTGIKLMMLPSFEKLINLKILSITSIKAFPKDLCPMLETVTTGLEVLEIGDCDCLSKEFAVSLKRFINLTTLRLENCCGRWENFAEDVFKAIISLEKLRILELVNIEFSSSVEEGLEKCVGVRSLLIIPAYVSQSATTNCHLIECLQKLSKTLTHLVWGLTNELLRVTDLFITQYQQNQHSIGYNLELSQSTLPSNNIPILRTRKLKQRTTGTEPTSDDDQCSVSDNVDILSVPALEKLLSTMMPNAKTKVYKVPFVGTTRVFLSEHFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -