Elan006449.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_013282895.1
- Location
- scaffold:9306209-9319576[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-83 9e-79 265.5 39.9 1 300 115 406 115 406 0.91 2 2 0.0047 1.3e+02 2.3 3.8 121 172 405 456 404 466 0.92
Sequence Information
- Coding Sequence
- ATGGATAGTCAAAGTTTAACCACTGGTGGTCGTCGAAGGCTGCCGACTACACATTACGCTGAAGATCAAGCATTTGACCAAATAGCAAAAGAAGTAAAATGCAATGTTGGTCATACAAATCGTACTTATTCTTCTTCAGAAGACGATGAATATTTCTGTAGATATTCTAATGTTGATATCGATGAACTATCAGATAGTTTTTTAAATGATCATCATCAACCAATTCACCTTAGAGTACGAAATAATGGTTCTAGTTATAACTATTATTCCAGTGGTGAATCTTTAGTGAGTGATTTTGAAGCAGATGGAATTGTAACGTTTTTGGACAAAACTAATAATAAAGCTGAAGCTCGATTGACCGCAAGACGTCAAGCCCGCGCTGAAGCAAGAGAAATTCGCATGCGAGAAATTGAACGACAACAAAAAAAAACCGAAGAAAATGCAGACAAAGTTTTTGATATGTATGCAGCAGAGGGGTCTACTATAAATCGAACTTCTAGAGGAACAAGTGCAACGAAGACGGCTTCCATACTTAATACAAATAGTTACCAATCTAGTAGACGTAATTCAGTTGATTCTCTTGATGAATCAAATTCAAATTTTCGAGATTTTAGGATGGAATTAAAAGACCTTGAAGAGAAGTTTAGAATAGCAATGGTTCAGAATGCACAACTTGATAATGAAAAGGCAGCTGTGTCTTATATGGTTGAGTTGTATAAAGACAAATACACCGATATAGAGGAAGAACTTATGCATATCAAACGAAAACACAAAGATCTTTGTAAAGAAAATGAAAAGCTAAAACGTTTATTAAGTACTCAAAATCTAGAAATTATTGAACTTCAACAAGAATTGAAAGAACGTGATCAATTAATTGAGGAAAAAGGCTTAGTTATTATTAACACTAAAGAAGAACATTGGAATGAGAATAATGATCAAAATAATTCTAAAGTAAAACGTGTTTTAGTTTCAACTGAAAATGCTCAACTTCTACATGAAGAAGCAGATGTGCAATTCAAAAATATTGATGAAGAAAAAAGAAACTATTTAAACGAAATCAATCAGCTGAAATTAGAACTACAAGAGGCTAAGCGTCTTAATGATAACCAATATAATGGTTCAGAAGACACTTTAGAAGACAACACACAGAAAGAAACCAACAAAGTACTCACAGATTATAAATTTAAATGGCAAAAAGCTGAACAAGACATTTCTACGTTACAAGCCAATGTTGCTAGGCTTGAAAGTCAAGTTATTAGATATAAAACATCATCAGAAGCATCTGAAAAGTCTGAAGATGAATTGAAATTTGACAAGAGAAAACTAACACGTGAGCTTCGAGAATCTCAAGCAAAAATTGAAGAATTAGAGACATCAAATATGCATTTGTTAAAACGATTTGAAAAATTGAAAAATGCAAAATCGAGTCTCTTGAAAGACCTATAA
- Protein Sequence
- MDSQSLTTGGRRRLPTTHYAEDQAFDQIAKEVKCNVGHTNRTYSSSEDDEYFCRYSNVDIDELSDSFLNDHHQPIHLRVRNNGSSYNYYSSGESLVSDFEADGIVTFLDKTNNKAEARLTARRQARAEAREIRMREIERQQKKTEENADKVFDMYAAEGSTINRTSRGTSATKTASILNTNSYQSSRRNSVDSLDESNSNFRDFRMELKDLEEKFRIAMVQNAQLDNEKAAVSYMVELYKDKYTDIEEELMHIKRKHKDLCKENEKLKRLLSTQNLEIIELQQELKERDQLIEEKGLVIINTKEEHWNENNDQNNSKVKRVLVSTENAQLLHEEADVQFKNIDEEKRNYLNEINQLKLELQEAKRLNDNQYNGSEDTLEDNTQKETNKVLTDYKFKWQKAEQDISTLQANVARLESQVIRYKTSSEASEKSEDELKFDKRKLTRELRESQAKIEELETSNMHLLKRFEKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -