Ehay001106.1
Basic Information
- Insect
- Eretmocerus hayati
- Gene Symbol
- -
- Assembly
- GCA_029851415.1
- Location
- CM056741.1:17643513-17644952[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00036 5.6 8.9 0.1 26 44 39 57 31 62 0.89 2 9 1.7e-05 0.26 13.1 0.2 27 52 68 93 65 94 0.91 3 9 0.67 1e+04 -1.6 0.1 26 48 123 145 119 152 0.75 4 9 1.7 2.6e+04 -2.9 0.0 22 30 148 156 142 169 0.76 5 9 0.68 1.1e+04 -1.6 0.1 27 48 181 202 178 203 0.84 6 9 8.1e-05 1.2 11.0 0.0 21 45 232 256 229 259 0.92 7 9 0.16 2.5e+03 0.4 0.0 26 47 293 314 288 317 0.88 8 9 0.0015 24 6.9 0.1 16 45 336 366 330 369 0.83 9 9 0.13 2.1e+03 0.7 0.0 21 44 426 449 418 458 0.76
Sequence Information
- Coding Sequence
- ATGCGGCAACATAGTGGtgcgaaatttttttcgtgcAAGGACTGTAGTGAATCATTTGACACCAGAAATGAGCTTAGAGTGCATGAAAAGGAGCATCGTGAAAAATTATGTTTTACTTGtgatatttgcaaaaaaaatttcaaagagaaacGTAATCTTCGCGCACATATGCTCATTCATGAAAAGTTGAATCTACTCAACTGCGTGATATGCCATAAGGTACTTTCTGATAGAAGAAGTTTGCGGAACCATATGGAGCTGCATACAGAACAAAAGCCcgtaaaatgcaaaaattgcGGCAAGAGCTTCATCAGCGAAAGACGTTTAGCGTGTCACATGATGACACACACTCCAAAAGATCAATTCACTTGTGATATATGCGGCAGAAACTTTGCCCAGAAATTCTATCTGTCGCTTCATATGTCTGATACGCATTTGAAAGAAAAACCTTACGGGTGTGAGGTTTGTGGCAGAAATTTCAGCCGAAAATACACATTGAAACTACACACTATCTTGCATACGGGCATCAAGTCGTTCCCGTGCGAAGTTTGTAGTAAGAGTTTTCGTAGTAAAAGCGAGTTACAGATTCATGTCGAGCGGATTCATGAGAAAATCAAACGTTTCTCATGTGAGCTATGTGATAAGAAGTTTTTTGAACCAAGTTACCTGCGGGTGCACATGATGATACATACGGGTGAAAGGCCCCATACTTGCAAAATATGTGGGAAAGGCTTGCTCACgaaacaaaatttgcaaagGCATCTGAAGGCTCATGGGAGAACCGAGCTATTCAAATGCAATTTATGTGACAAACAACTAAATACAAAAGAATCTCTGGACGCTCACATGGCTCTTCACACGGGGAAAAAGTCATTCTTGTGTAATATTTGCGGCAAAGGCttccatcaaaaaaattctcttacAAGTCATTTGAGATTACACCAGAGCAAAATATGTTGTGATGTTTGCGGAAAATGTTTCAGTGGCAAAAGCGAGTTGAAAACGCACTCAAGAAAACATACAGGAGAGAAACCTTTTGTGTGTCAAATTTGTGGTAAAAGATTCACACAGAAGAGTAATCTGAATTCTCACATGAAATCACACCAGGATCCTATTGATAGAGCTGTGCCATGCAGAGTTTGCGGTAAAAAAGTGGTAAATTTGAATCAACATATGATCACGCATGATAATGATAGAATTTTGCGGTGTGCGGACTGCGAAAAATGTTTCAGAAGAAAACATGTTCTGATCTCACATATACAAATAGAACACATGGGTGAGGATCCACACTCGTGTAAAATCTGTGGCTCAAGCTTCATGAGTAACGATGGCCTGAAGTACCACGAGACAGTGATACATAATAAAGAACCTAAATCTATCCTAAAGAGGAACATTGATGTGAAAAATTCTACATCATCCAAGAGTGATATCCCGATATGA
- Protein Sequence
- MRQHSGAKFFSCKDCSESFDTRNELRVHEKEHREKLCFTCDICKKNFKEKRNLRAHMLIHEKLNLLNCVICHKVLSDRRSLRNHMELHTEQKPVKCKNCGKSFISERRLACHMMTHTPKDQFTCDICGRNFAQKFYLSLHMSDTHLKEKPYGCEVCGRNFSRKYTLKLHTILHTGIKSFPCEVCSKSFRSKSELQIHVERIHEKIKRFSCELCDKKFFEPSYLRVHMMIHTGERPHTCKICGKGLLTKQNLQRHLKAHGRTELFKCNLCDKQLNTKESLDAHMALHTGKKSFLCNICGKGFHQKNSLTSHLRLHQSKICCDVCGKCFSGKSELKTHSRKHTGEKPFVCQICGKRFTQKSNLNSHMKSHQDPIDRAVPCRVCGKKVVNLNQHMITHDNDRILRCADCEKCFRRKHVLISHIQIEHMGEDPHSCKICGSSFMSNDGLKYHETVIHNKEPKSILKRNIDVKNSTSSKSDIPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00668973;
- 90% Identity
- iTF_00668973;
- 80% Identity
- iTF_00668973;