Eoch033030.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451413.1:6220601-6226226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0018 0.18 13.4 0.3 1 23 32 55 32 55 0.94 2 19 0.016 1.6 10.4 0.2 2 23 80 102 79 102 0.96 3 19 0.0006 0.059 14.9 0.1 1 23 150 172 150 172 0.97 4 19 0.0093 0.91 11.1 3.0 1 23 177 200 177 200 0.95 5 19 0.92 90 4.9 1.0 2 13 208 219 207 230 0.86 6 19 6.4e-05 0.0063 17.9 0.4 2 23 238 260 237 260 0.97 7 19 0.0034 0.33 12.5 1.0 1 23 266 288 266 288 0.94 8 19 2.6e-05 0.0025 19.2 0.8 1 23 294 316 294 316 0.98 9 19 0.00032 0.031 15.7 0.7 1 22 322 343 322 343 0.96 10 19 0.44 43 5.9 2.5 1 23 408 431 408 431 0.90 11 19 4.2 4.2e+02 2.8 0.1 2 23 461 483 460 483 0.92 12 19 0.53 52 5.6 5.2 2 23 506 527 505 527 0.97 13 19 0.00076 0.075 14.5 1.0 1 23 531 553 531 553 0.96 14 19 0.28 28 6.5 1.4 1 23 558 581 558 581 0.90 15 19 0.035 3.4 9.3 1.0 2 23 589 611 588 611 0.93 16 19 0.00032 0.031 15.7 1.3 2 23 619 641 618 641 0.96 17 19 0.012 1.1 10.8 5.1 1 23 647 669 647 669 0.96 18 19 7.5e-07 7.3e-05 24.0 0.9 1 23 675 697 675 697 0.99 19 19 7.8e-05 0.0076 17.7 5.9 1 23 703 726 703 726 0.97
Sequence Information
- Coding Sequence
- ATGATGGAAGAAATGAAGAAACACCGCACAAATCTGAAAGAAATTCTAACTTGCTCCAATGCCACGCCCTTTGTTGGAGTCAATTATCGAGGTTATTTGTGTTCCTACTGCGATTCTCAGTATCCGAACCCGGCAGCCCTGAAGAAACATACTCGTGACAATCATAGAGGTTTATACAATTCCGTACATAAGAACAGTATAGACGAGTTTTGTGTAAGGCTGGATATAACTGATTTACGATGCACACTCTGCGACGTTAACATAGACACACTAGAAAACTtgctaaaacatttaaaaagtgATCACAAAAGAGATATACATACGGAAATCAGAAACCAACTCTTTCCATTTAAATTTAACAGCGAAACCATGAAATGTTGTTTGTGCTCAAGTGTTTTTGAAAAGTTTAGGATATTACTTCAACACATGCATATTCATTATAGGAATTTTATTTGCGATGAGTGTGACATGGGATTTTTAACCAAAGGAAGCCTCAGGCGACACGTTGCCACACATATAACAGGagtttttaaatgtaattcGTGCTCAAAAACCTTCGAAACTAAAAAGAGGGCACAGCGTCATAAAAAAGCTGTTCACGTAGACAAGGGTTTGAAGAGTAAATGTGGGTACTGtaatgaaaaatttaaaaattgtatgaGAAGAGATGAACATTTGGTGGCAATACATGGAGTCAAGTTGAAGGTTGTCAAATGTAATGCGTGCGACAGGACGTTTCCTAACACAAGCGCACTAAGGATCCACACGAGACGGGACCACTTGATGGAGAGACggttcaaatgtacacaatgcGATAAGGCATTTTTCCAACCTGTCGGGTTAAAGTTTCACACGGTAACACATACAAAAACAAGAGAGTTCCAATGTACGGTGTGCCTGAAGTCATATGGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACGTTAGACGGTTTAAGTGTGAGCATTGCCGTCAGGCATTTGTGCAGAAAGCCAGCTGGAAGGGGCACATGAGGAgTTACAACAAACCTATAAAACAACCTGAACCAAAAAACAACCCACCAGCCAAGGAAAGCGCCTTTAACGAGAGCCTTAACTCTTTTAAAGCCAAGATGTCAGTCAGAGAAGAATTTGAAAAGCATCAGAAGAATACACAAATGATAATAATGTGTAGCAATGCAACCCCCTTCCTACAAAAGCTGGACACCGGTTATGTCTGTTGTTACTGCAACGATCAGTATCACAACCCCGCCGATCTAAAGAAGCATAACCTAGAAATTCACGGAGACAaatataacccagtaactgctCACGTTATAAAGAACTCCAGGAAAACTGAATTTTGCGTGAAATTAGACATTACAGGCTTAAAATGTAAGCTCTGCAGTTCAGATATTCCGTCCCTAGAGCAACTTGTAGATCATCTACAAAATgaacataaaagaaaaatatttacggaTATCAAGAATAAGATTTTACCATTCAAGTTTGAAAATGATGATATTCGCTGCTGCATTTGCTCCAATATATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATACACATTACAGGAACTATATTTGCGAGCATTGCGATCTAGGTTTCGTGACCCTTACAAGTCTAAGAAGTCATTCAGAAAAACATAAGTTAGGCGTATTCAAATGCAAGTTTTGCCCCAAAGTATCTGATACACTTCGAAAGAAACAGTCGCACGAAAAAGCGGTGCATGTATTAGGATATCTGGTGAGCAAATGCGGGTACTGTAACGAAAGGTTCACGAGTACCAAAAACAAGGATGAACATTTGGCGAAAGTCCATGGCGTTCAGATACGTGCTCTCAAATGCCAAGCTTGTGacaaaacttttcaaaacaaaAGAGCTTTGACTATACACACGAAAAGAGACCACTTGATGGAACGAAAGCATAAGTGTTCCCAATGTGAAATGAGGTTCTTCAATTCTAGTAGTTTGAAAATGCATTCAACGAAGCATTCGGGTGTGAAGGCGTTTCAGTGTGACGTATGTCAGAAAGCTTACGCCCAGAAGAAGACTCTGACACAGCATATGAGGATACATTTAGATGATAGACGCTTTAAGTGCAAACACTGCGGACAGGCGTTCGTGCAGAAGTGTAGTTTGAAAGGACACATGAAGAATAGACACGGAGAAAATGTACAATGA
- Protein Sequence
- MMEEMKKHRTNLKEILTCSNATPFVGVNYRGYLCSYCDSQYPNPAALKKHTRDNHRGLYNSVHKNSIDEFCVRLDITDLRCTLCDVNIDTLENLLKHLKSDHKRDIHTEIRNQLFPFKFNSETMKCCLCSSVFEKFRILLQHMHIHYRNFICDECDMGFLTKGSLRRHVATHITGVFKCNSCSKTFETKKRAQRHKKAVHVDKGLKSKCGYCNEKFKNCMRRDEHLVAIHGVKLKVVKCNACDRTFPNTSALRIHTRRDHLMERRFKCTQCDKAFFQPVGLKFHTVTHTKTREFQCTVCLKSYGRKETLRQHMEIHSDVRRFKCEHCRQAFVQKASWKGHMRSYNKPIKQPEPKNNPPAKESAFNESLNSFKAKMSVREEFEKHQKNTQMIIMCSNATPFLQKLDTGYVCCYCNDQYHNPADLKKHNLEIHGDKYNPVTAHVIKNSRKTEFCVKLDITGLKCKLCSSDIPSLEQLVDHLQNEHKRKIFTDIKNKILPFKFENDDIRCCICSNIFEKFRKLQEHMHTHYRNYICEHCDLGFVTLTSLRSHSEKHKLGVFKCKFCPKVSDTLRKKQSHEKAVHVLGYLVSKCGYCNERFTSTKNKDEHLAKVHGVQIRALKCQACDKTFQNKRALTIHTKRDHLMERKHKCSQCEMRFFNSSSLKMHSTKHSGVKAFQCDVCQKAYAQKKTLTQHMRIHLDDRRFKCKHCGQAFVQKCSLKGHMKNRHGENVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238028;
- 90% Identity
- -
- 80% Identity
- -