Bvim020982.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:530253-535883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.91 1.3e+02 4.9 0.9 1 23 35 58 35 58 0.91 2 20 0.41 59 6.0 0.0 2 21 87 106 86 109 0.89 3 20 2.5 3.5e+02 3.5 3.9 2 23 132 153 131 153 0.97 4 20 5.9e-05 0.0083 18.1 0.1 1 23 157 179 157 179 0.95 5 20 0.0014 0.2 13.7 2.7 1 23 184 207 184 207 0.97 6 20 1.1 1.5e+02 4.7 2.4 2 22 215 235 214 237 0.76 7 20 0.00015 0.021 16.8 1.4 2 23 245 267 244 267 0.97 8 20 7.8e-05 0.011 17.7 0.9 1 23 273 295 273 295 0.98 9 20 2.8e-05 0.004 19.1 0.8 1 23 301 323 301 323 0.98 10 20 6.1e-06 0.00087 21.2 1.4 1 23 329 352 329 352 0.98 11 20 0.48 68 5.8 2.5 1 23 452 475 452 475 0.90 12 20 1.6 2.2e+02 4.1 0.1 2 23 505 527 504 527 0.94 13 20 1.5 2.2e+02 4.2 6.3 2 23 550 571 549 571 0.97 14 20 0.0016 0.23 13.6 0.3 1 23 575 597 575 597 0.96 15 20 0.31 44 6.4 1.4 1 23 602 625 602 625 0.90 16 20 0.1 14 7.9 0.9 2 23 633 655 632 655 0.93 17 20 0.00035 0.05 15.6 1.3 2 23 663 685 662 685 0.96 18 20 0.013 1.8 10.7 5.1 1 23 691 713 691 713 0.96 19 20 6.4e-07 9e-05 24.3 2.4 1 23 719 741 719 741 0.99 20 20 0.00033 0.047 15.7 5.8 1 23 747 770 747 770 0.97
Sequence Information
- Coding Sequence
- ATGTTAGAAATGATTGAAGAGATGAAGAAACACCACATAAATCTGAAAGAAATACTAACTTGCTCCAATGCCACGCCCTTTGTCGGAGTCAATTATCTAGGTTATCTGTGTTGCTACTGCGATTCTCAGAATTCAGACCCTGCAGCCCTGAAGAAACACACACGTGACATTCATAAAGGCGAATACAACTCCGTAATAccaaatgttaataaaaatataaaagacgAATTTTGTATGAGGCTGGATATAACTGACTTACAATGCACACTTTGCGACGCTGACATAGACACACTAGAAAATTTGTTGAAACATCTAGGAGGTGACCACAATAGAGATATACATACGGAAATCAAAAACCAACTGCTTCCATTTAAGTTTAACAGCGAAACCATGAAATGTTGTGTGTGCTCCAGTATTTTTGAAAAGTTTAGGAGTTTGCTAGAACACATGCACATTCACTATAGGAATTTTATATGTGATGAGTGTGACATGGGTTTCATAACCAAAGGAAGTCTCAGGCGACACGTCACCGAACATACAACGGGCGTTTTCAAATGTAATTCGTGCTCTAAAACCTTTGATACTAAGAAGAAGGCACGGCGTCATGAAAAAGTTGTTCACGTAGATAAGGGTTTAAGTAGTAAGTGTGGGTACTGTAACCAGAGATTTAGGAATCATATGAGAAGGGATGAGCATTTGGAGAAAACACATGGAGTCAAATTGAAGGTTATCAAATGTCATGCGTGCGACAGGACGTTTCCTACCACATACGCACTAAGGATCCACACGAGACGAGACCACTTGATGGAGAGACGGTTTAAATGTACACAGTGCGATAAGGCATTTTTCCAAGCTGCCGATTTAAAGTTTCACATGATAACGCATACAAAAACAAGAGAGTTTCAATGCACTGTGTGCCTAAAGTCATACGGTCGGAAGGAAACTTTAAGGCAGCATATGGAGATACACAGTGACATAAGACGGTTTAAATGCGAGCACTGCGGTCAGGCATTTGTGCAGAAAGCGAGCTGGAAGGGGCATATGAGGAGTAAGCACAATGAAATGGTACTCGAAATAAAACTATGTATAGTAGTTCCGAAAACAAATAATGAATATAAATCAAAGCGCAAGAGAATACAAGGAGTTCTCTTTGAGATCGgtGACAACAAACCTAAGAAACAACCTGAACCAAAACCCAACCCATCAGCCAAGGAAAGCGCTAGTAATGAGACCCTTAACTCTGCTAAAGCCAAGATGATAGTAAGAGAAGAATTTGAAAAACATCAGAAGAATACGCAAATGATAATAATGTGCAGCAATGCAACACCTTTCCTTCAAAAGCTGGACATGGGTTATGTTTGTTGTTACTGCAACGATCAGTACCATAACCCTGCCGATCTAAAGAAGCATAACCTAGAAATTCACGGAGACAAATATAATCCAGTAACTGCACACGTTATAAAGAACTCCAGAAAAACTGAATTTTGCGTCAAATTAGACATTACAGGCTTACAATGTAAGCTTTGCAGTTCAGATATTTCGTCTTTAGAGCAACTTGTAGATCATCTCCAAAAtgagcataaaaaaaaaatatttacggaTATCAAGAATAAGATTTTACCATTCAAGTTTGAAAACGATGATATTCGTTGCTGCATTTGCTCCAACATGTTCCAAAAATTTCGGAAATTACAGGAACATATGCATACCCATTACAGGAACTATATTTGCGAGCAGTGTGATCTAGGTTTCGTGACCCTTACCAGTCTTAGAAGCCATTCAGAAAAACACAAGTTAGGCGTATTCAAATGCAAGTTTTGCCCGAAAGTATCTGATACACTACGAAAGAAACAGTCGCACGAAAAAGCGGTGCATATATTGGGATATTTGGTGAGCAAATGCGGGTACTGTAGTGAAAGGTTCACGAGTACCAAAAATAAGGATGAACATTTGGCGAAAGTCCATGGCGTTCAGTTACGTGCTCTCAAATGCCAAGCTTGTGACAAAACTTTCCAAAACAAAAGAGCTTTGACAATACACACGAAGAGAGACCACTTGATGGAAAGAAAGCATAAGTGTTCCCAATGTGAAATGAGGTTCTTCAACTCTAGTAGTTTGAAAATGCATTCAACGAAGCATTCGGGGCTGAAAGAGTTTCAGTGTGACATATGTCATAAAGCTTACGCCCAGAAGAAGACGTTGACACAGCATATGAGGATTCATTTAGATGATAGACGCTTTAAGTGCAAACACTGCGGGCGGGCATTCGTGCAGAAGTGTAGTTGGAAAGGACATATGAAGAATAGACATGGAGAACATGTACAATGA
- Protein Sequence
- MLEMIEEMKKHHINLKEILTCSNATPFVGVNYLGYLCCYCDSQNSDPAALKKHTRDIHKGEYNSVIPNVNKNIKDEFCMRLDITDLQCTLCDADIDTLENLLKHLGGDHNRDIHTEIKNQLLPFKFNSETMKCCVCSSIFEKFRSLLEHMHIHYRNFICDECDMGFITKGSLRRHVTEHTTGVFKCNSCSKTFDTKKKARRHEKVVHVDKGLSSKCGYCNQRFRNHMRRDEHLEKTHGVKLKVIKCHACDRTFPTTYALRIHTRRDHLMERRFKCTQCDKAFFQAADLKFHMITHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRSKHNEMVLEIKLCIVVPKTNNEYKSKRKRIQGVLFEIGDNKPKKQPEPKPNPSAKESASNETLNSAKAKMIVREEFEKHQKNTQMIIMCSNATPFLQKLDMGYVCCYCNDQYHNPADLKKHNLEIHGDKYNPVTAHVIKNSRKTEFCVKLDITGLQCKLCSSDISSLEQLVDHLQNEHKKKIFTDIKNKILPFKFENDDIRCCICSNMFQKFRKLQEHMHTHYRNYICEQCDLGFVTLTSLRSHSEKHKLGVFKCKFCPKVSDTLRKKQSHEKAVHILGYLVSKCGYCSERFTSTKNKDEHLAKVHGVQLRALKCQACDKTFQNKRALTIHTKRDHLMERKHKCSQCEMRFFNSSSLKMHSTKHSGLKEFQCDICHKAYAQKKTLTQHMRIHLDDRRFKCKHCGRAFVQKCSWKGHMKNRHGEHVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667783;
- 90% Identity
- -
- 80% Identity
- -