Basic Information

Gene Symbol
nfxl1
Assembly
GCA_905404285.1
Location
FR990089.1:12420225-12422699[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 2.8e+04 -7.8 5.6 15 19 135 139 134 139 0.81
2 18 0.01 1.5e+02 3.2 0.3 4 10 170 176 169 177 0.97
3 18 3.1e-07 0.0044 17.6 15.9 3 19 187 203 186 203 0.95
4 18 1.2e-06 0.017 15.8 12.4 3 19 240 256 238 256 0.91
5 18 3e-09 4.3e-05 24.1 11.9 1 19 291 309 291 309 0.99
6 18 1.3e-05 0.19 12.4 19.3 3 19 346 362 338 362 0.86
7 18 2 2.8e+04 -5.3 2.2 5 10 385 390 385 390 0.88
8 18 2.1e-05 0.3 11.8 17.1 1 18 396 413 396 414 0.97
9 18 2.3e-08 0.00033 21.2 16.9 1 19 423 441 423 441 0.99
10 18 0.0002 2.9 8.6 6.4 9 19 489 499 487 499 0.89
11 18 0.0038 54 4.6 6.5 1 12 509 519 509 519 0.96
12 18 0.4 5.7e+03 -1.9 3.4 14 18 548 552 548 553 0.85
13 18 0.14 2e+03 -0.4 0.4 7 12 568 573 568 580 0.81
14 18 5.4e-06 0.077 13.7 5.2 1 11 589 599 589 600 0.97
15 18 0.69 9.8e+03 -2.6 1.0 15 18 614 617 613 618 0.86
16 18 0.00079 11 6.8 14.8 1 18 629 646 629 647 0.89
17 18 1.1e-05 0.16 12.7 12.4 1 18 688 706 688 707 0.91
18 18 1.4 1.9e+04 -3.6 0.8 6 10 737 741 736 741 0.86

Sequence Information

Coding Sequence
ATGGCCCGACGATACCGCGATGCTGCAGCGAAATTGCAGCTAAATGTTCAAAAACATTTGAAGGAAATGAAGGATCATCTTTCTTCTTCGGAAGATGAGGAGCCCTACGAACCCAGCGTCTTAGAAGGAGTGTTTCAAAGTTACTGGCGTGGTGGCGGCGACACTCAGATGCTGAACAGAACTAAAAATCTTCTAGAAGAAGCGCTTAGCGGCCGCTCCGTAACTTGTCTCATTTGCATAGCATCTATAAAGCGGAACCACGCTATTTGGACTTGTGATCACTGCTACTCCTACTTCCATTTCTCCTGCATACAAAAATGGGCGAACGACAGCATAAGTCTCCGTAGCGAAGAAAATCAAGGCCCGGTAACGGTGTACGTGCCGAAAAAAGTCGAGTGGTGCTGCCCTAAATGTCGACAGGCGTATAGTAAAGAACAGATACCTCGTAAATACAGATGCTTCTGTGGTAAAACTGACGATCCGCCCCAGCATCCATGGCAAATCCCACACACTTGTGGAGAAGTCTGTGGAAAGAGGTTGTCCTCTGGAGATAATTGTAAGCACAAGTGTCTGCTCCTCTGCCACCCTGGTCCATGTCCACCATGCCCCCAAACAGTCAACGGGATATGTTACTGCCACAAAGAACAGAAAAAGGTTAGATGTAGCTCTGCTAAGTGGTCTTGTGGGCAACAATGTAAGAGAACTCTTCTCTGTCAAGCTCATAAGTGTGAAAATGTATGCCACGAGAGTGACTGTCCCCCTTGTAGCTACTCTAGCACGCAGCCCTGCCAATGTGGGCTAGAAAAATCCAAAAGACCATGTGACGATCCATTCTGGCAGTGTAAGAAACAATGCAACAAGCCATTTGAATGTGGTTATCACAAATGCATGAAAATCTGCCACTCTGGCAGTTGCGGCACATGTCCAAACTCTGGCATGCGTTCCTGTCCATGCGGAGCTAATCAGCGCTTCGTTCAATGCCCTGATGTAATGGAAACTTGCCTAGGAACCTGCGGGAAACAGCATGACGATTGTGAACACAGCTGTCCAGAGAAATGCCATAAAGGAAAATGCCCCCCTTGCCAAGTTCTTATACAGAAGAAATGTCTATGTTCATCTCACACAAGATCTTTACCTTGCAGCAAAGAGTTTAAGTGTGAAACTAAGTGCCGAGGCACAAGACCATGTGGAAAACATGGTTGTGCTCGCAAATGTTGCAATGGGATCTGCCCCCCATGTGAGAAAACTTGCGATAAACCTCTTCAATGTGGACGCCACAAATGCACCACTATTTGTCATCATGGGCCATGCTATCCCTGCCCACTGGAGTCTAAAGTCACCTGCAAGTGTAAAGAAACATATCTCACAGTACCATGTGGGCGGGAGAGGTTTGTCAAGCCACCAAAATGTGTCCTCCCTTGCAAAATCAAATACAAATGTGGTCATTTAGAGGAGAACAAACATTCTTGCCATTTCGGAGACTGCCCTCCATGCAAGGCTATCTGCAATAAAACTTATACAAAATGCGGACATGAATGTGTATCTATTTGTCATGAATATGTTGCTGTAGTATTCAAGCAAGTGGAAAAGCCAGCAACACCATGGGAAGTCCAGCCTCCAAAGACCAAAATCATGACTTTGGAGTGCCCTCCATGCGATGTCCCTATCCCTATCGTATGTTTTGGAGAGCATGAGACGGAAGAACAACCGTGTCATACAGCTGCAAGACGACCATGTGGAAGAGAATGTGGCAAGCCACTGGCTTGTGGAAACCATACTTGTACTTTACTCTGTCACCTATTTACTTCTGACCCTCAACATCCTCATGTGCCTTGCTTATGTAAGCCTTGTGACAGAGGCTGTGAGAAACCCCGTCCCGAAAAATGCTCACATAAATGCGCTAAAGGAGCCTGCCATCCCGGGCAATGCCCATCCTGTGAAGTGTATGAACGTCTAGCCTGCCATTGTGGTACTACAGAGCTATATCTCCGTTGTCGCGAACTCAGTTCAGCTACTGAAGAAATGCTATCATGCAAGCAGCAATGCCCAAAGAATTTAGAATGTGGTCATCGTTGCCGGAACACCTGCCATTCTGGCCTGTGTGGCAATCAAACGTGTACAAAAAAGACCAAAATTCAATGCCAATGTGGTAACTTGAAAAAAGAAGCACCATGCAATGCTGTTAGAAGTGGAGAAGCAAAAGTTTCTTGTGATGAAACATGTGAAGCAAAAAAGATGGCTGCAAAAATTGAGCACGAAAAAGAGCAACAGAGACACAAGCAGTTAGAAGAAGAGAGGAATAAAAAAGAACTTGCTGAATATGAGTGGAAACTAAGTGGGAAAAAGAAGAAATACAAGGAAAAGAAGGTTGCTATCAACAAAGATGATAGAAACTTATTGCAAAAGTATGGGCTACCAGCTCTCTCTGTCTTGGTTGTCATTTTTGCAGCTATATATTATATATTTTATTTGTAA
Protein Sequence
MARRYRDAAAKLQLNVQKHLKEMKDHLSSSEDEEPYEPSVLEGVFQSYWRGGGDTQMLNRTKNLLEEALSGRSVTCLICIASIKRNHAIWTCDHCYSYFHFSCIQKWANDSISLRSEENQGPVTVYVPKKVEWCCPKCRQAYSKEQIPRKYRCFCGKTDDPPQHPWQIPHTCGEVCGKRLSSGDNCKHKCLLLCHPGPCPPCPQTVNGICYCHKEQKKVRCSSAKWSCGQQCKRTLLCQAHKCENVCHESDCPPCSYSSTQPCQCGLEKSKRPCDDPFWQCKKQCNKPFECGYHKCMKICHSGSCGTCPNSGMRSCPCGANQRFVQCPDVMETCLGTCGKQHDDCEHSCPEKCHKGKCPPCQVLIQKKCLCSSHTRSLPCSKEFKCETKCRGTRPCGKHGCARKCCNGICPPCEKTCDKPLQCGRHKCTTICHHGPCYPCPLESKVTCKCKETYLTVPCGRERFVKPPKCVLPCKIKYKCGHLEENKHSCHFGDCPPCKAICNKTYTKCGHECVSICHEYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCDVPIPIVCFGEHETEEQPCHTAARRPCGRECGKPLACGNHTCTLLCHLFTSDPQHPHVPCLCKPCDRGCEKPRPEKCSHKCAKGACHPGQCPSCEVYERLACHCGTTELYLRCRELSSATEEMLSCKQQCPKNLECGHRCRNTCHSGLCGNQTCTKKTKIQCQCGNLKKEAPCNAVRSGEAKVSCDETCEAKKMAAKIEHEKEQQRHKQLEEERNKKELAEYEWKLSGKKKKYKEKKVAINKDDRNLLQKYGLPALSVLVVIFAAIYYIFYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01172943;
90% Identity
iTF_00207522;
80% Identity
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