Basic Information

Gene Symbol
-
Assembly
GCA_905404285.1
Location
FR990068.1:18268470-18282077[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0012 0.11 13.6 1.6 2 23 206 228 205 228 0.96
2 28 0.0017 0.15 13.2 0.1 2 21 264 283 263 284 0.92
3 28 9.4e-05 0.0083 17.2 0.4 2 23 321 343 321 343 0.97
4 28 0.0003 0.027 15.6 0.4 1 23 406 429 406 429 0.97
5 28 0.91 80 4.6 0.1 1 23 445 467 445 467 0.94
6 28 0.00049 0.044 14.9 0.6 2 23 510 531 509 531 0.95
7 28 9.6e-05 0.0085 17.1 3.4 2 23 573 595 572 595 0.97
8 28 0.00028 0.025 15.7 1.2 1 23 645 668 645 668 0.97
9 28 0.0039 0.35 12.1 0.2 1 23 725 747 725 747 0.97
10 28 0.025 2.2 9.6 9.1 1 23 758 780 758 780 0.97
11 28 0.6 53 5.2 0.5 2 23 792 813 791 813 0.92
12 28 0.0033 0.29 12.3 1.0 1 23 823 845 823 845 0.98
13 28 0.11 9.4 7.6 2.6 2 23 873 894 872 894 0.95
14 28 0.00053 0.047 14.8 3.7 1 23 905 927 905 927 0.97
15 28 7.4e-05 0.0065 17.5 0.3 1 23 935 957 935 957 0.97
16 28 0.0025 0.22 12.7 0.2 2 23 977 999 976 999 0.97
17 28 0.052 4.6 8.5 0.6 1 23 1017 1039 1017 1039 0.97
18 28 1.4 1.2e+02 4.1 2.4 1 23 1046 1068 1046 1068 0.92
19 28 0.042 3.7 8.8 0.1 2 23 1079 1101 1078 1101 0.95
20 28 0.016 1.4 10.2 0.1 2 23 1124 1145 1123 1145 0.95
21 28 0.048 4.2 8.7 0.2 2 23 1226 1247 1225 1247 0.91
22 28 0.0083 0.73 11.0 1.2 3 23 1255 1275 1253 1275 0.95
23 28 0.06 5.3 8.3 0.7 2 23 1286 1308 1285 1308 0.94
24 28 0.11 9.3 7.6 0.5 2 21 1325 1341 1325 1343 0.73
25 28 5 4.4e+02 2.3 2.0 2 20 1347 1365 1346 1367 0.91
26 28 0.43 38 5.6 1.9 2 23 1416 1437 1415 1437 0.93
27 28 0.004 0.35 12.0 0.8 2 23 1448 1470 1447 1470 0.97
28 28 0.43 38 5.7 1.1 2 20 1508 1526 1508 1528 0.93

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGACTATGTCTCAAGCTCGGCGATTTCTACTCAATTTTTACGGTCGACAATGCCGTCCAACTCGCAGAAATGGTTATGGATTGCACGAGGATAAAAGTATATGAAGGTGATGGGTTACCAGATAAAGTGTGTTCTGAGTGCATACAAAAGCTCAGCAGTGCCTACATATTTAAACAGCAATGTGAGAGAGCTGACCAGGAATTACGGCGCAACTATGTACCACCTCCGGGCTTCAGCATCAGCCCACCACCTCCGAACAGACAAAGTAGCGATTCTGCATTTTCAACACACACTGACAGTTCCAATTTAAAGTCGTCATTCATAGAAACCAAAGTAACACCGGTCAAAAGAAATAGGAAGAGAAGCGTCGAAAGCGATAATGCTTCTGAAGCTAGTCGGTCACAGGATTATGGCCGGCCTAGCAGCTCCAAACGCGTGGAGGAGCTTCGCAGAACGCAGAAAAGACCACGACTTTCCGTCAACAATTCCAACTCTCAGTGCGATTCCGATTACGAAGACAACGGAGGTTCCAGCTATGTCCCAGAGACAGATAATGATTCTGACGAACCGCTCATCAAGCCTAACGAAAACAAATGTGACGTTTGCAGCAAAACTTTCCGATGGAGAAAGAGCTTGAAGGTACACATGAAGAATGTCCACGGGAAGAAGGATAGTTTTGATGCGGTCGTCGCTGGCAATTCGGTCACTTCTGTCAGTACACCTAATAAAACTGCCGATACGTCGTATGAAGACGATGAAAAGCTTATTTGCCCTCGATGCGACAAAATCTTCAAATTGAAGATCATGCTAAAGAGACACATAGAATCATGTGCAGGAAAATCGTCTGAAAAGTCACCTGTAAAGTCACCGCAAAAAGAGTTGTTTATAACCTTGGAACCGATAGACGCCGTACACAAGATCACAGTAAAGAAACCTACTTGCGAATATTGCACAGCCAAATTCAAAACTGTAGAAAATCTGGAGAAACATCTGAGAGTTGTCCACGCGGCTGTTCTGAAGAAAGAGATCGACGCGAAGGTGTTGAAGGCTGGGCCGAAACCCGGTCTGAAGTTCAAAGAGGGCTCCAACGTGTTCACTATTCCATGTATCTACTGTCAGAAGCCATTCGATGACTACTATGTCCACCAATCTCACTTCGGCACATGCCCACAGAAGGACATGCGATCTGTTTTCGAATGTCCGATCTGCAAGAAGGTTTCAAGCCGGAAAAATGGTTACTTCATCCACATAAAGAACATCCATTTCGAACCTCGAGCGGCCAAGGTCGAGGACCCCTCGGCGTCTTCCTTCGAATGTCGGATATGTAGCAAGAAACTCCTCTCTCAGGAAATGCTCGTCACTCATTTGGCAGCTCATGCGTCTAATATAGACGATAACGATGACACCGTACACGACGATGGTGATTCGAGACCAAGCACCTTCGAAGAAGATTCAGCGTCCATGCAATCTGCTCATAGCACGTCGGTCCCCGGCGGACCACTCAAATGCGGCGTGTGCGACAAAGAGTTCAAGTATCGCAAGTCGCTCGCCACACACGAGGCAAAACACACGGAAGATGAAATGAGAGTGAAAAACGAACCTCCGGACAAAACATCGATGAGTTTACTGAGCGAGGCTCACCGGATTTCAGATTTTGAATCTAGTCAAGATGATGACGAGACGGACGACCTTACCTGCGATATTTGCGAGAAAATGTTCTCTTACAAACGTCTCCTTGAACATCACAAGAGAACGAAGCACAACATGTCTTCCGGAACGAAGCGAGCGAAAATAAACCTTAAAGACTGCTCTGTGAGGTGCTTGCTCTGTGACTTGGAGATGAAAGTGAGCGCCATCAATGAGCACAATCAGAAGCACATCTCAATGAACATCAAGCCGAGGAACATTTATACATGTGCAGAGTGCGCGCAGAAGTTCAAGAGTTGTAGCAATTTGGCGAGCCATATTAAACTAGTTCATAGGTTGAAGCATACGAAAGAGCAAGTGCCGCGGCAGTTCCTAGGCGCGGACTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACCACATCCAGAGTCACAACGGCTTTGGAGAGGTTCCGCCACAGGCGGCTCCAACCGTGGACCTCAGCGGGTTCACGTGTCCAATCTGTAGCAAGAAGATGCCCACGCTCATCTCACTGAAGCGGCATGTCAACTGGCACTCGTATGTCGGCGCCAACCTCGAGAAGAAGCACGAGTGCTTCGTCTGCAAGGAGACATTCAAGTTCCAATGCCACTTCAAGATCCACATGCGCGAGCACTACCACGACCCGAACATCGACCCTGCGCTCCTCACCTGCGCCATCTGCGGCCGCAAGAGCAAACACCTGCGCGCAGCCCAGGCACACAACAACTGGCACAAGCAGACACGCTTCCAGAACAAGGACTACCAGTGCTCCATTTGCAAACGCGTCTTTCAATACAGAAAGGTCTATTTATCCCACATGGCCATACATTATAAAAAGGGAGAGAGCGCCATGAATACTGTAGTCGGACACGTAAATTGGGGGGATAAAGCATCCATGGACGGGACATCGACTTGCAATCTTTGTGGGAAAGTCTGCCTTTCCGAAACCTCTTTGAAGCATCACCTCATCTGGCACAAATCGAAAACTCTGCTTTACGGAGCGAGACACGAGTGCCAGATGTGCCAGCTCCAGTTCACCAACAAGCGACATCTGGAGCTGCACATTCGCGCGCATTACGAAGACGAGAACGGCCCCTTCAAGTGCAACATCTGCGGGAAAGGATATATCGACGAAGAGTACATGCGGCGGCACGTTAAAGGACACAACTTCGACCACTCCTCGCACAAAAAGCGGCTCGAGAAACTGCGCAAGGATAAAGTGAAGTGTCCGATTTGTTCCCGGTACTACCCCGACCTGGTGCGGCTCATCCGGCACTTGCGGCGCACGCATCCCGAGTCTAAAATGATCAAGGAAGACCCGGACGCGCCGCCGCCGGCCTACTTCTCCTGCAAGCTCTGCGCCAAGGTGTTCCTCGACGAGTCGCGACTCAGGAAACACGAAGAGATGCATCTACGGAAGCCGAACTTCTTCCGTTGCAAGTTCTGCGGTCGCAAGACGATCTCGCTGAAAGCCCACAACTTACACATCAAGGGCCACCTGACGAGGAAGCACGTGGACAGCCCGCTGAAGTGCCCGCAGTGCGCCGAGGTGTTCGTGCTGGGGTACGCGCTGCACCGCCACCTGCGCGACGCGCACGGCGTGCGGGAGACGTGGATCGCGGAGCGCGCGGCGGCGCCGCTGGCGGGCCCGCTGCAGGAGCTGCAGTGCGCCGTGTGCCTGAAGGTGCTCGCCAGCAAGGGCAACTTCGAGCGGCACCTCGACTACCACAACTCTCTGCGCTGCAACTACTGCTACGACTACTTCGGCGGGCTGCGCTTCCTGGAGGGACACCTGGCGTTCAGCTGCGAGAAGAAAAAGCTCGTCGGCGACACGGAAGTGCACGCGCGGCGCATCAAGTGCGAGCTTTGCTATAAGGCCTTCCATCTCCAGGTGAAGCTGGACTGCCACCTGCGGGCGCGGCACGGCGTGGCGGTGGAGCGGCGCGCGGGCGCGGCGAGCGCGGACACGGTGTGCGACTACTGCTTCCGAACCTTCGAGAACGAGTACGCGCTCGCGGGCCACAAGGTGTACCACCGCTCCGTGGGCTACTTCGGCTGCCTCTACTGCCCCAGGAAGTTCAACACGCGCGCCGCCTACAACCGGCACAAGACGCAGCACCTCTACACGCTCAACGCGGACGAGCCCACCAAGTGCGAGCACTGCGAGGAGACGTTCGTCGCCTTCCGCGACATGATCGACCACATGAAGGACGACCACGGGGACGACAAGGAGTGGATCGTCGAGCCGAAGGAGTCCATAGAGGAGAAGTGCCCGATATGCGACAAGATGTTCTACAACCTGCCGCGCCACCTGCAGTACCACGAGGAGAATAAATGCAAGAAATGCAGCGAGTACTTCTACTCGCGGCTCGACTACGACAACCACCTGTGCGCCATCGAAAGCGACGCCGAGGAGGAGACGTTCGGCGCCGACACGCCGGCGCGAGTTTACGAGGAATGCACGTTCTGCTTCAAGCCGATCACCAAGAAGGACTCCAAGAAGAAGCACGATATCTTACACAGAACGTCGGGCGCGATCTCGTGTCGCTTCTGCCACCTCAAGTTCAAAACCATCGACGCGTTCAACATCCACGCGTTCTCCCACCGCAGCCGCAAGTACGTGAAGCGGCCGATCAAGTGCCGAGTGTGCAAGGAGCGCTTCGTGAAGTACGGGCCTTTCATGAAGCACATGAAAACTGCGCATAAATCCGCGAAGAAGCTACATTACCGAGCCACCGTGAAGGCGGAGCGGTGCGTCGTGTGCGGGGAGTTCCTGCCGAACTTGCACAACCACTACCGCGCGCATCTCGTCAACCGCTGCCAGCTGTGCGCGAAGTACTTCACGTCGTCCCGACTGTACGCGCGACACGAGTGCGCCAAAGAAGACGCGGACCCTTCCAAAGTGTTCACGTCCGACGTGGACCTGTCCGCTCTCATATCTTCCTACACTCCCAAAGACGAGAAGGACGACGAGAAGTTCTACGGGTACACGGACGACGAGGAAGACCCGGATCCCGAGCCGGAGGTGTTGCCAGCGCAGTCGAAGCCCAAAGTCGCGAAAACTTACTCGAAGCCGGCGAGCCGGCCCCGAGTGGCCGAGCTGCCGCGCGCGCAGCCGATAGACAGGCAGCTGGCGGAAGACGAGCGCAACTTGCACATGATGGTCCAGTCTCCGATCATCTCGGACGTGCTCTCGCTTTACCAAAAGAAGGAAATCGACGTAGACTCGAAGAGTCAGTCGAGCCAGATCGACGAGATCGTCGACCTCAGCGATGATTCGTTGGACGCGACGGATTTGAACGCGCCCGTTGTTGTCATCGATGATTCTAGTTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCTRIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFIETKVTPVKRNRKRSVESDNASEASRSQDYGRPSSSKRVEELRRTQKRPRLSVNNSNSQCDSDYEDNGGSSYVPETDNDSDEPLIKPNENKCDVCSKTFRWRKSLKVHMKNVHGKKDSFDAVVAGNSVTSVSTPNKTADTSYEDDEKLICPRCDKIFKLKIMLKRHIESCAGKSSEKSPVKSPQKELFITLEPIDAVHKITVKKPTCEYCTAKFKTVENLEKHLRVVHAAVLKKEIDAKVLKAGPKPGLKFKEGSNVFTIPCIYCQKPFDDYYVHQSHFGTCPQKDMRSVFECPICKKVSSRKNGYFIHIKNIHFEPRAAKVEDPSASSFECRICSKKLLSQEMLVTHLAAHASNIDDNDDTVHDDGDSRPSTFEEDSASMQSAHSTSVPGGPLKCGVCDKEFKYRKSLATHEAKHTEDEMRVKNEPPDKTSMSLLSEAHRISDFESSQDDDETDDLTCDICEKMFSYKRLLEHHKRTKHNMSSGTKRAKINLKDCSVRCLLCDLEMKVSAINEHNQKHISMNIKPRNIYTCAECAQKFKSCSNLASHIKLVHRLKHTKEQVPRQFLGADLADFCEVVVTKAEPLDHIQSHNGFGEVPPQAAPTVDLSGFTCPICSKKMPTLISLKRHVNWHSYVGANLEKKHECFVCKETFKFQCHFKIHMREHYHDPNIDPALLTCAICGRKSKHLRAAQAHNNWHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGHVNWGDKASMDGTSTCNLCGKVCLSETSLKHHLIWHKSKTLLYGARHECQMCQLQFTNKRHLELHIRAHYEDENGPFKCNICGKGYIDEEYMRRHVKGHNFDHSSHKKRLEKLRKDKVKCPICSRYYPDLVRLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDESRLRKHEEMHLRKPNFFRCKFCGRKTISLKAHNLHIKGHLTRKHVDSPLKCPQCAEVFVLGYALHRHLRDAHGVRETWIAERAAAPLAGPLQELQCAVCLKVLASKGNFERHLDYHNSLRCNYCYDYFGGLRFLEGHLAFSCEKKKLVGDTEVHARRIKCELCYKAFHLQVKLDCHLRARHGVAVERRAGAASADTVCDYCFRTFENEYALAGHKVYHRSVGYFGCLYCPRKFNTRAAYNRHKTQHLYTLNADEPTKCEHCEETFVAFRDMIDHMKDDHGDDKEWIVEPKESIEEKCPICDKMFYNLPRHLQYHEENKCKKCSEYFYSRLDYDNHLCAIESDAEEETFGADTPARVYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCHLKFKTIDAFNIHAFSHRSRKYVKRPIKCRVCKERFVKYGPFMKHMKTAHKSAKKLHYRATVKAERCVVCGEFLPNLHNHYRAHLVNRCQLCAKYFTSSRLYARHECAKEDADPSKVFTSDVDLSALISSYTPKDEKDDEKFYGYTDDEEDPDPEPEVLPAQSKPKVAKTYSKPASRPRVAELPRAQPIDRQLAEDERNLHMMVQSPIISDVLSLYQKKEIDVDSKSQSSQIDEIVDLSDDSLDATDLNAPVVVIDDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00634735;
90% Identity
iTF_00206324;
80% Identity
-