Ebal003635.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Episyrphus balteatus
Gene Symbol
-
Assembly
GCA_026256485.1
Location
JAGTYB010000034.1:1254295-1269778[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0036 0.43 11.9 0.5 2 23 121 143 120 143 0.96
2 16 0.0013 0.16 13.3 0.4 1 23 149 171 149 171 0.98
3 16 5.7e-05 0.0068 17.6 1.4 2 23 180 201 179 201 0.98
4 16 0.00038 0.045 15.0 1.7 1 23 207 230 207 230 0.97
5 16 6.8e-05 0.0082 17.4 2.5 1 19 262 280 262 282 0.97
6 16 1.5e-06 0.00018 22.6 1.0 1 23 290 312 290 312 0.98
7 16 5.8e-07 6.9e-05 23.9 1.2 1 23 318 341 318 341 0.98
8 16 0.0017 0.2 13.0 1.1 1 23 351 374 351 374 0.95
9 16 6.9e-07 8.2e-05 23.6 2.5 2 23 470 491 469 491 0.97
10 16 1.1e-07 1.3e-05 26.1 0.8 1 23 497 519 497 519 0.99
11 16 0.0012 0.14 13.5 1.6 1 23 530 554 530 554 0.98
12 16 0.0003 0.036 15.3 0.1 1 20 560 579 560 581 0.94
13 16 0.31 37 5.9 3.4 1 23 620 642 620 642 0.97
14 16 1.9e-06 0.00022 22.3 1.3 1 23 648 670 648 670 0.99
15 16 5.2e-05 0.0063 17.7 1.7 1 23 676 698 676 698 0.96
16 16 3.8e-05 0.0046 18.1 2.4 1 23 704 726 704 726 0.97

Sequence Information

Coding Sequence
ATGCAAAACAATAGCGATTTGTTTACACCATTGCCAGTGGAATTGTCCACACCCAATGGACTCCTCTATCAATTCAATGAAACCTCAGAAAAATATCTTAAACATGATTTTTATACTTTTGAAATGGATGGTTTTACTGTCCCAGGAATCGACGATGACATTCCACCGCCTATAGTCGGTTTAAGTCCAATTCCCGAAGAGACAAGTTGTTCGATGATAATTCATCATCCACTCGAACCATTGTTCTCACCCGTCGACCCAACGTCGTCGTTAGCATTAATTCCTAAAGTTGTTACACCACCAAATGCAAATCAAGAAGAAGGGCAAAAATTGGCAATTCCCACGAAAGATAAACAACTTTCATGTGATTTATGCGAAGAGACTTTCTTCTCAACTCAAGCTCTTCGTTTGCATCGACGCGTTCAACATATTTCCACTAAAGAATTCCGTTGTCGCAAATGTCCAGCTTCATATAACTTTGAATCGAATTTGCTACTGCATCTGGCATCGCATGTTCCAAGTGTTAGTACGATTAAACAATGTCCACAGTGTAATATGGTTTTCAAGCGCATATCGAGTTTTAAGGGTCACTTGAAAACCCATCAATCTAGCGACAGATTCAAGTGTAATCGTTGTGACAAGGAATTCGAATTGAAAGGTTACTATGAAAAGCATATAACGAAAGATCATAAACCAGATGTTGATGGAACTATTGAGGAAATTCTATTTAAAGTGGCAAATAATACAAAATGTCGAAGACCATCAAAGTTAATCAATGGAAAATACAGCTGTCAATATTGTGGGAAGAAATTCACTAAACCTTGTCTCTTAAAGCGACATGAAGTTTGTCACACGGGTACAAAGCCATTTCAATGTAGCCAGTGTGATCAGGGATTTACACAAAAATCATCTCTGGACAGACATATGCTTTTGCATCAGGGTGTTAAGGATTTTAAATGTCCAATGTGCAGTTATAGCTTTACCCAAAAGAACAATCTAATAGTCCACATCCAGAGAACCCATACAATGAATGCCGACGCCGACAATATGTTTGCTTGTGAATTCTGTCCCTGTGTATTCACAAAACTAAGTAGTGTCAATCGTCATCGAGCAATGATACATCCAGACAAGGAGAATTGCTCTGGGCAAGATGTTTGCCTTCAAAATAATGACGATGAAGATGATGATAGTGTGAATGTTGCCAGGGTTATGGAACAACTAAAAAGTTTCCAAGAATCAATGGGAATTATGGATATGAAACCAGCTGCCTTAGAATTGTCACTTATGAAACCACCATCGCCTGGACCGATAGTCAATACGGTCACCATTGTCGACACAATAAATCCGAAGAAAGAAAAGACATTCAAAACAGCCAAAGAAATCATTTACAAGGGAGAACGGACGATTACTTGTGTGTATTGTGATAAACCATTCAAGAGGCAATATGATCTTTTAAGACATCATCGAACTCACACCAAGGAAAAGCCATTTACATGTAATATCTGCAATAAAGGTTTCTCAACAAATAGTGGCCTTAAAATCCACCTCAACACACACACTTCATCCGATGAAAAGCCAGTTAGGGCTTATAAATGTGCATTTGATGAATGTCATAAGCGATTTGCATCATTACGAGCTTTAGATATTCACACCAAGACCCATACAAATTCCATTTCATATATTTGTCCAGTTTGTTCGAAAATCTTCACCTCCAAAGCTGGTTTATCCGCACACAAGCACATCACAAAAGATCAAGAATTCGATAGTGTTCGTGAGTTTTTAAAATCTCCCGTGCAAATTGAACCAAAAAATCCAGCCGAGGAAGCTTCTCGAGCCGAAGAGTATTTGAAAAGAATTCATCAGTGTTTTGTGTGTGGTTTGAAGATGCAAAAATTATCCCATCTTCGACAGCATGAAGCtacccatactggagagaaaccctatcagtgtgagatttgtTTTAGAACCTACACGACGCAAAGTTCCCTTAATCTTCATTTGAAAATTCACACATCTCAAAAGACTCACATCTGCCAAGTGTGCAATGCAAAGTTCTTCACACAATCTTTGCTAATGCGACACATGATCTCTCATAGTAATGAGCGAAACTTTGCTTGTCCGTACTGCGATGAGCGATTTAAAACCAACGACAATTGTAAGACGCATATTTTAACCCATGCCAGGAGTTTGCTGGCTAGTCCTGATCCTCCTCCTCCTGAGCCATCGTTCAATCGAGAATATTTTATCGAATCTGAAGAAATTACACTAAACAATTCCATAACTCAGCAATATGTTGCAATTGTTGAGAGTTCTGAGAAGAATCTTTCGCCGAAATTCCTTCAACTTGAATTGGTTAAAAATTGCAAAAAGCATAAACATAAAAATTTAACTATCGAAACTGTGACAACCAAGACAATTTCACCAAAGAAATCATCATCATCAAAGAAATCCTTAGCTAGATCGGAACGAATAACTCTATCGACTGTTGCTAAGAATATTTATATGAGTCTTAAGCCAGAACCATAA
Protein Sequence
MQNNSDLFTPLPVELSTPNGLLYQFNETSEKYLKHDFYTFEMDGFTVPGIDDDIPPPIVGLSPIPEETSCSMIIHHPLEPLFSPVDPTSSLALIPKVVTPPNANQEEGQKLAIPTKDKQLSCDLCEETFFSTQALRLHRRVQHISTKEFRCRKCPASYNFESNLLLHLASHVPSVSTIKQCPQCNMVFKRISSFKGHLKTHQSSDRFKCNRCDKEFELKGYYEKHITKDHKPDVDGTIEEILFKVANNTKCRRPSKLINGKYSCQYCGKKFTKPCLLKRHEVCHTGTKPFQCSQCDQGFTQKSSLDRHMLLHQGVKDFKCPMCSYSFTQKNNLIVHIQRTHTMNADADNMFACEFCPCVFTKLSSVNRHRAMIHPDKENCSGQDVCLQNNDDEDDDSVNVARVMEQLKSFQESMGIMDMKPAALELSLMKPPSPGPIVNTVTIVDTINPKKEKTFKTAKEIIYKGERTITCVYCDKPFKRQYDLLRHHRTHTKEKPFTCNICNKGFSTNSGLKIHLNTHTSSDEKPVRAYKCAFDECHKRFASLRALDIHTKTHTNSISYICPVCSKIFTSKAGLSAHKHITKDQEFDSVREFLKSPVQIEPKNPAEEASRAEEYLKRIHQCFVCGLKMQKLSHLRQHEATHTGEKPYQCEICFRTYTTQSSLNLHLKIHTSQKTHICQVCNAKFFTQSLLMRHMISHSNERNFACPYCDERFKTNDNCKTHILTHARSLLASPDPPPPEPSFNREYFIESEEITLNNSITQQYVAIVESSEKNLSPKFLQLELVKNCKKHKHKNLTIETVTTKTISPKKSSSSKKSLARSERITLSTVAKNIYMSLKPEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00984435;
90% Identity
-
80% Identity
-