Basic Information

Gene Symbol
-
Assembly
GCA_026256485.1
Location
JAGTYB010000046.1:1009741-1020798[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.8e-06 0.00033 21.7 2.6 2 23 175 196 174 196 0.97
2 28 0.001 0.12 13.7 2.6 2 23 216 238 215 238 0.96
3 28 0.0017 0.21 13.0 3.3 1 23 273 295 273 295 0.98
4 28 3e-06 0.00035 21.6 1.7 1 23 302 324 302 324 0.98
5 28 0.0002 0.025 15.9 1.3 1 23 443 466 443 466 0.95
6 28 2.1 2.6e+02 3.2 0.6 2 22 504 524 503 524 0.91
7 28 0.18 21 6.6 0.1 3 22 536 555 534 555 0.91
8 28 7.9e-06 0.00095 20.3 1.2 2 23 568 589 567 589 0.97
9 28 0.00022 0.026 15.8 1.8 1 23 596 618 596 618 0.96
10 28 0.26 32 6.1 0.3 3 23 633 653 631 653 0.93
11 28 0.033 4 8.9 0.1 1 23 731 754 731 754 0.92
12 28 0.76 91 4.6 0.5 1 23 763 786 763 786 0.96
13 28 0.0045 0.54 11.6 2.7 2 23 800 821 799 821 0.98
14 28 1.2e-05 0.0014 19.8 0.7 1 23 828 850 828 850 0.98
15 28 0.52 62 5.1 5.4 1 23 997 1020 997 1020 0.98
16 28 0.0057 0.68 11.3 1.5 1 23 1057 1080 1057 1080 0.96
17 28 0.031 3.8 9.0 3.6 1 23 1090 1112 1090 1112 0.96
18 28 3.9e-06 0.00047 21.3 1.0 1 23 1119 1141 1119 1141 0.98
19 28 0.002 0.24 12.8 0.1 2 23 1165 1187 1165 1187 0.96
20 28 0.0014 0.17 13.2 0.9 1 23 1228 1251 1228 1251 0.97
21 28 0.11 13 7.3 0.7 1 23 1288 1311 1288 1311 0.91
22 28 0.00054 0.065 14.5 1.9 1 20 1317 1336 1317 1337 0.95
23 28 0.00012 0.015 16.6 1.9 1 23 1347 1369 1347 1369 0.98
24 28 1.9e-05 0.0022 19.1 0.3 2 23 1391 1412 1390 1412 0.95
25 28 0.00028 0.034 15.4 3.3 1 23 1418 1440 1418 1440 0.99
26 28 8.2e-07 9.8e-05 23.4 3.4 1 23 1446 1468 1446 1468 0.98
27 28 7e-07 8.4e-05 23.6 2.4 1 23 1474 1496 1474 1496 0.99
28 28 0.00029 0.035 15.4 0.2 1 23 1502 1526 1502 1526 0.93

Sequence Information

Coding Sequence
ATGGAAGAAATTGATTTAATAAAACCTTTGGAGAATTTAAACATTGAAGAAGTTTGCCGTGCTTGTTTTGAAACATGTGAACAATATAAAAACCTATTCGATGATGCTGAATCCATCGATCAACGAACGTTGGGCGATGTCTTCTTTGACGTTGTGAAAATTGAAATGAAGGCAAACGCTGAAACACCACCTTGCCGCATTTGCTTGTCTTGTGCAAGTGATCTCATAAATGCTTATAATTTCATACAAAAATCACAAAAAAACAATGGGCGTTTACTTCAGTACTTAATAAATGCCAATATTAAAAAAGCTGATTGTCTCACTGAATTTCCTATGGACATACCCATGGATAATAGTGTCACAGATTTTCTTCAAATCAAAGTCGAAAACGAAGCACTTCATGATTACGACTACAATGAATCAATTCCAGACAATGATAGAAATTCATCGGACATTAATTTTGATTCAGATGAAAGTGATTATGAACCGCTTGTTAGCAAGAAGGAAAAACTTAAAAAATTACAATGCACATATTGCGATCGTGTATTCAAACGTCAAGATTTCTTTGAAAATCATATGAAAAAACATAAAGAAGAAGATGTAAAGAAAAAAGAAATCGATGATTCCGATGACGAGCAAAAGCTTGAATGTGACGATTGTGATTTTAGTTGCTCTTCAAAAATGGAAATGAAAAAACATCAAAAATCAGATCATCCAAGCAGCAAAAAATCAAAGAAACCCTTGAAGACTCGTAGCCAACGTACCAACATGAGTACCCGAAGCAAAACAAAGCAAACCAAAGAAAAGTCTGGGCGCTTTGAGTGCGACCATTGCAGTAAAACATTTGCATGGAAAAAGGATCTCTTTCGTCATGAAAAATCTCATGAACCTAACACCAAGAAGTACTCATGTCCACATTGTGATCGTCGATTTATACGCAAGGATAAACTTCAATCACATGTTCTTGTACATTTAGGTGGCATAGTAAAACCTCGTTGTTCCAAGGCCACTTTAGCATTCTCCCGCCAATTGTATTCTCAAGAAAAATTCAAAGAAATTGTCTGTATGATTTGTAGCTACGACAAAGCAGAAAATATAAAAGAGCTCAGTAAGCATATTAGTTCACACGATGGGCAGCAAATTGAAGGTTTCGAAAATAGTGAATATGTGAAGAAATTCTATGCCGACAAGGACTTACGAGAAGTTATGATGCTTCTAGGTAATCAAATCGAACAGAAAGAATTTGGAAAATTACATTCTGTTATCAATGTAAATGGCTTAGAGATGGGTATTAGTGATTCGGATGAAAGTGATCCAGAAACTTTGTACACATGTGAAGTTTGTACTGAAACATTCAATCGAAAGCACAAGCTTATAGCACATTCATTATCCGGACATACTGTGGACGAGTGTTTATACAAATGTGACAAATGCAAGTTAGAATTTACTTGTAAGGAAGTTTATGATAGCCACCAGAAGCATCACTGTAACAACGCCGACAAAGATTTACATTGTGAGAATTGTCCTGCCCGATTTGTTTGGCCTCAAAATCTTGCAAATCACAAATGTACCAAGGAAACTGAATCTGGTAAAGATAAGACTATTTGCGAACCTTGTGGAGAAATATTTGCCACACAAAAAGCTTTCCGTCTTCATAAAAAGACAAAATGCGGAACAGTTGAGCTAGACAAAGAGAGCACTACCTGTGAAATTTGCAACAAAGTCTTTAGTTTCCCCAGGGATTTGAGAAAGCATAAAAAAATTCACATTCCCGATGGCAAATCTCATGATTGTTCGGTATGTGGCGAGAAATTTCTTCGTTCTGATAATCTTCGAAATCATTTGAAGTCGCACACTAGTAAGGTTGAAAGGCCATTGGTAGCCAAGAAATTAATATGTATGCTTTGTGGCGATAAATTCACAACAATCGGTAGTTTAAGATACCATTTGTTTAATCATTCCGATGGTCAAAGTGAGATTGACTTTGAGAATTCCGGATTTGTTTTGAACTTTTATCCTGGAGTAGGGAAAGAAGTAGTATCGGAATACATAAAGAATTGCTTTAATGAGCAAAAGTTGTCGCAACTGTATTTAGCGGTTAATAAAATTGGTCTTGAGATGACACTGAGCGATTCTGATAGTGATGACGATGAGCAATCTTTCAAATATCAAGAAACTCCTTCGAAAACTTACGTATGTGAGCTGTGTAATGTTAAGTTTCCCCGACGACAAGCCATTATACAGCATCAATATGCTGAGCATGATTCGAAAGACAACAATTTTCCGCATAAATGTGTCAAGTGTGAAGATCAATTTGTATCTGGGGCTCTTTTAGAGCGTCATTTCAAAATCGCTCATACTTGTTTCAAAGAGGAAAAGAGTCCGGAAGAGAACAAACAGTGTGAAGTTTGTGGCAAGAAGTTTATCTGGCTAAAAGATTTGCATAGACATAAACGTAGTCACATACCTTATGAGAAGAAATTCGAATGTTTGATTTGTGCTAGAAAGTTTAACCGCAAAGACAACATGAGAGCTCATATGAAAGTTCACACATCAGAAAACCAAGTCAAGGACAAAGGAAAGGCTTCAATTAAATGGGAACAACAAGATGAAAATCTATGCAAGCCCAATGGACAGAAAGTTATTCAATGTAAGATTTGTTTATCAAAACATAATACAATCAAAGATTTAACAAATCACTTGATGAGCCACAAAGATCCTGCAACATTCAAACAAAGAGAGGCCGAAGCAAGGGAGATTTCAATGATGATATATGGAAAGCAAATGGAGATGCAAACTCTAGAAAGAGCAATTTGCAAAGATCTTGAAAAAGGCAGCAATACGCGTTTCTATTCAATTACCAATGAAGCTGGTTATGAGTTGAATCTAAATGATTCGGAAACttgttccgactttgatgccgatgatgatgacgacgatgacgatgatgatgatatgttaagagatcgaaaaGTTATCCTCAAAGGATACACTTGCCAAATATGTTGTCAAAACTTTAATAGAAAATTCAAAATATTCGAACATCAAAGAACCGACCATCAATGGGAGGAATTGCCATACGAATGCAATCGATGTGGCTCCAAATATGTGTGCGAAAAAATTTATCAATTACATTTGCAAAATGATTGTGAGAATAATGAGAAACAATTCAAATGTAAAACTTGTCCCATGAAATTCGCTTGGAAAGAGAACCTAAAGAATCATGAAAAATATATGCATGATCAGAATCCAGCAATGCCAAAGAAACATCATTGCGATATTTGTGGAAAGAGTTTCCTTTGGGTTAAAGATTTGACGCGTCATCAGAAGACACATCAAACTGAAGATGAGAAATTCGAATGTACTTGGTGCTTTAGGGTCTTTATGCGAAGAGATAATCTAAAGGTTCATATGAAAGTGCATCAGAACGCGACACACATCCTATTGCCAGACATTTACTATCTTGCTCGACCCAATGGGGCAAAACTTGCTCAGTGCAAGCTTTGTGATCAGCAATATACAAATATATCTGATTTAGCTGAGCACATTCAAAATGGACATATTAAATTACAGATGCTCAGCATCACACCAAACCCAGCCAGCTATTCAATAACAAATGCACTAGGCTACGAAATGGATATAAACGATTCCGAAACAGAGCGCGAGGGCGAAGATGAGAAGTATGTTTGTGATCTTTGTGATGCCCGATATAATCGTCGATTTAAATTACTGCAACATCAACAATCGCTACATTATTCTGACAACATTCCTCACAAGTGTATCGATTGCAGTTTTAAATGTGTTTCAGAGCTAGTGCTCAATTATCACATGCGCACTCAGTGCATGAATCTTGTTAAGCAGTTCCGCTGCAGCAAGTGTACTATGCGTTTCATGTGGAAGGAAAATCTAGAGAATCATGAGAGCTTAATACACGATGGTAAGCGAAAACATACTTGTACCGTTTGCAAAAAAGATTTCGCCACACAACACGACCTAAGAAACCACACCGAATGCAAAGCCCCGGCAGAGGAGAAACTTTTCAAATGTGATTTGTGTGACCGTAAATACAATCGAAAAGATCGACTGATGAAACACGCGAAAGTTCATGCTCCCGGCGGTAAAGAAACAAAACCAAAACGCATTAAAAGCGAAACAGCGGACAAAAAAttcttgtgtgcattctgtggcaaagaagtgtcaagttcatccaatcttgtcatccacatgcgacggcacactggtgagaaaccatttaagtgtgaattctgtaataaaggtttccctagatcttcagatttggcttgtcatcgaagaacacacaccggagaacgaccacataaatgcactgtgtgtgaaaaggctttctcccgttcgtataaacttcagacccatatgcgaattcattcgggcgagagaccttataagtgcacttattgtgaaaaaagctttacacaatcgaatgatttgacacttcatgttcgtcgccatacgggcgaaagaccctatgtgtgtgagacatgtggcgaaagatttatacaaggaactgcacttaaaaaccatcgaagaatgcgtgGGCATTATGAAATTTAA
Protein Sequence
MEEIDLIKPLENLNIEEVCRACFETCEQYKNLFDDAESIDQRTLGDVFFDVVKIEMKANAETPPCRICLSCASDLINAYNFIQKSQKNNGRLLQYLINANIKKADCLTEFPMDIPMDNSVTDFLQIKVENEALHDYDYNESIPDNDRNSSDINFDSDESDYEPLVSKKEKLKKLQCTYCDRVFKRQDFFENHMKKHKEEDVKKKEIDDSDDEQKLECDDCDFSCSSKMEMKKHQKSDHPSSKKSKKPLKTRSQRTNMSTRSKTKQTKEKSGRFECDHCSKTFAWKKDLFRHEKSHEPNTKKYSCPHCDRRFIRKDKLQSHVLVHLGGIVKPRCSKATLAFSRQLYSQEKFKEIVCMICSYDKAENIKELSKHISSHDGQQIEGFENSEYVKKFYADKDLREVMMLLGNQIEQKEFGKLHSVINVNGLEMGISDSDESDPETLYTCEVCTETFNRKHKLIAHSLSGHTVDECLYKCDKCKLEFTCKEVYDSHQKHHCNNADKDLHCENCPARFVWPQNLANHKCTKETESGKDKTICEPCGEIFATQKAFRLHKKTKCGTVELDKESTTCEICNKVFSFPRDLRKHKKIHIPDGKSHDCSVCGEKFLRSDNLRNHLKSHTSKVERPLVAKKLICMLCGDKFTTIGSLRYHLFNHSDGQSEIDFENSGFVLNFYPGVGKEVVSEYIKNCFNEQKLSQLYLAVNKIGLEMTLSDSDSDDDEQSFKYQETPSKTYVCELCNVKFPRRQAIIQHQYAEHDSKDNNFPHKCVKCEDQFVSGALLERHFKIAHTCFKEEKSPEENKQCEVCGKKFIWLKDLHRHKRSHIPYEKKFECLICARKFNRKDNMRAHMKVHTSENQVKDKGKASIKWEQQDENLCKPNGQKVIQCKICLSKHNTIKDLTNHLMSHKDPATFKQREAEAREISMMIYGKQMEMQTLERAICKDLEKGSNTRFYSITNEAGYELNLNDSETCSDFDADDDDDDDDDDDMLRDRKVILKGYTCQICCQNFNRKFKIFEHQRTDHQWEELPYECNRCGSKYVCEKIYQLHLQNDCENNEKQFKCKTCPMKFAWKENLKNHEKYMHDQNPAMPKKHHCDICGKSFLWVKDLTRHQKTHQTEDEKFECTWCFRVFMRRDNLKVHMKVHQNATHILLPDIYYLARPNGAKLAQCKLCDQQYTNISDLAEHIQNGHIKLQMLSITPNPASYSITNALGYEMDINDSETEREGEDEKYVCDLCDARYNRRFKLLQHQQSLHYSDNIPHKCIDCSFKCVSELVLNYHMRTQCMNLVKQFRCSKCTMRFMWKENLENHESLIHDGKRKHTCTVCKKDFATQHDLRNHTECKAPAEEKLFKCDLCDRKYNRKDRLMKHAKVHAPGGKETKPKRIKSETADKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLACHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYVCETCGERFIQGTALKNHRRMRGHYEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00984436;
90% Identity
iTF_00664263;
80% Identity
-