Eeuc008767.1
Basic Information
- Insect
- Epistrophella euchroma
- Gene Symbol
- grau
- Assembly
- GCA_947049305.1
- Location
- CAMRIP010000066.1:844520-850330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.16 20 6.7 0.2 2 23 241 263 240 263 0.93 2 18 0.0057 0.7 11.3 4.7 1 23 295 318 295 318 0.97 3 18 0.004 0.5 11.7 0.3 1 23 326 348 326 348 0.98 4 18 4e-07 5e-05 24.3 0.8 1 23 356 379 356 379 0.97 5 18 0.00032 0.039 15.2 1.2 3 23 387 407 386 407 0.96 6 18 0.21 26 6.3 0.4 2 23 416 438 415 438 0.94 7 18 1.5e-05 0.0019 19.4 1.3 1 23 443 466 443 466 0.95 8 18 5.9e-05 0.0073 17.5 1.4 1 23 472 494 472 494 0.98 9 18 0.0013 0.16 13.3 1.6 1 20 500 519 500 520 0.97 10 18 0.014 1.8 10.0 0.4 2 23 659 681 658 681 0.95 11 18 5.1e-05 0.0063 17.7 2.3 1 23 713 736 713 736 0.90 12 18 0.0033 0.41 12.0 4.2 1 21 744 764 744 766 0.90 13 18 6.1e-05 0.0076 17.5 0.3 1 23 771 794 771 794 0.96 14 18 0.41 51 5.4 0.1 3 23 802 822 801 822 0.95 15 18 0.032 4 8.9 1.0 2 23 831 853 830 853 0.95 16 18 0.0002 0.025 15.8 1.7 1 23 858 881 858 881 0.95 17 18 0.00023 0.028 15.7 3.0 1 23 887 909 887 909 0.97 18 18 0.0016 0.2 13.0 5.3 1 23 915 938 915 938 0.98
Sequence Information
- Coding Sequence
- ATGGTTTGCCgattatgtttaaataaaagcGATGATAGTATTGCAAtatttaatgaagaaaaaatcCAGAAGTATATAACAAAATTCCTGCAATTGGAGCTATCACCGGATGATCCAGTTTCCAAAGTAATATGTGCTAATTGTTGGCAGCAATTGGATAATTTTCAAAAGTTCTGCCTTCAAATAGAAGAAGCtcaaaaatcacttaaaatattGGCAGATAATTTAGTTCAAGAAGCTCAGAAAGATTTTGTTAAAGATTTGAGTCCTGTTAAAGAAGAAGACCCAGCGGAAGAATTTAATGaggATGCCTGCGATTACGAAGATTTACTGCCCTGTCTTGAGGAAGACATTTTAAAAGTAGAAAATAACTCTGACGAAGAAAATACGGCACCAAAACCAGCAACATCGAACTCTCCTGAAATAAAGGAATCCATTCCAACGCGAAGGTTAAGAGAAAAAAGGAAGACAATAGTAAAGGAAACAAATGAAAAGTCTGAAACAACTGAAGAGgaagaagatgaagaagaagaagaagaaaaagaagaacaatctaaaaacaaaagagctgtCGCAAATGCAAAGAGGAAATATTATCGAGCCAAAAAGGATGGACAAAACACCCGGGAGGAGAATAAAACCGGAAGGGCAAAAAAACTTTCGAGAGCTATGCTGCTCTCCAGGGAACAAGATGCAATCATCAAGAAGTATATGAAGCTATCGTGCGATATTTGCTCGATTGACCTTTCTGATTTTAATGACTTGCAAAATCATTTTCGATTCGTTCACAATCGCACAGGATATGCTGTTTGCtgcaaaaaaaagcttaaaaatcgTGGTCTAACTGTAGATCATATCAACGCACATAACAACCCCGATTATTTCAAatGCAAAGAATGCGGCAAAGTTATGTCTGATAGATTTTGCATGCAAAGACACAAGCTTACGTTTCACCCAACCGAAGAACTGAAAACATTTCAATGCTCTTACTGTCCTGAAAAATTGGCCTCTCAATACCTACTAGATCTGCATACCATAAAACATGTTCCAGAGGAAAAATGCACCTTCATTTGTAAGGAATGTGGAAAGGGATTCCCAACAAACTCAACTCTGAATAGTCATATAAAACGGAAACATTCTACAGCATACGATAGAATGTGCGAAATCTGCGCCAAACTATTTCGGCATAAATCAGCTTTTGAGCGTCACATGGAAGAGCATAAAGGTATTGTTCATCCTCAAGTGCAATGTACAGAATGTGGTTCATGGCTGAAAGACATACAAAGTCTTCGAAAACATATGAATAATAAACATGATGAAAAAACACATATCTGTAATATTTGTGGCAAAAATTCAACCTCCAAGAGTGCTCTTCAAAGTCACATTAAATATATGCATGAAATAACGGCTATTTACAAATGCTCATTTTGtgaaaaatcgtttaaaaagGCTATTAAACTGAAGgaacACGTGGCAACTCATACTGGAGAAGTTCTCTACACATGCCCGCATTGTCCAACAAAGTTCAATGCTAAGTCCAATATGCATTCTCATCaagGTGCTTACTATAACGTTGACATACAAGACCGTTTGGATGAAGAAATATCGAAAGTTCCATTACTAattggagaagaaaaaaaagaatccatACCGGCAACAAATGATTCATCTCAAGCAGAAAAATCTATTCCGTTACGAAGAGTTACCCGACGGTCAATTATTAAAATCCCAGATCATACTACCGCTCCAGaagtaaaaacagaaaaacgaaAGCGAGCTAAGATTAAAGAGCATGAATCTTCTGAGGACGAAGTAGAAATTCCTTGTAATGCTAATGCTAAGAGAACAGGCAGTCGATCCAAGAAGGGTGAACGAAAAAACAGAAAGGAAAAAGAAAGCAGATCTGAAAAGTtcttgaaaaatatgaaaactacaaaagaaaacGATGCATTTATTCAGAAACATATGAAACTATCGTGCGATATTTGCTCCATAAATTTTCCTGACTTTACGAAGCTGAAATATCATTTTCGTATAGTTCATCAACGCAGAGGATATGTTGTATGTTGCAATAGACAACTGAAAAAACGTGGCCTCATCGTAGATCATATTTACGTGCACAACGATCCAGAATATTTCAAATGTACGGAGTGTGGTAAAGTTCTGTCGGATAGATCTTGCCTGCAAAGGCACAATATTCTGTTCCACCAAGCCGAAGAACTAAAAACCTTTCAATGTACTCATTGCCCTAAAAAGTTTCCCACAAAAAAACTGCTCGACCTACATAGTGTTCATCACAATGAATGTACTTTCATTTGTAGCGAATGTGGAAAAGGATTCCCAACAAAAGCGACTATGAATGTCCATTTTAAACGAATCCACTCGACATTGTGCGACAGAATGTGTGAAATCTGCGCCAAACTTATTAAAGGCAAAGCAGCTTTTGAGCGTCACATGGAAGAGCACGAGGGTATTGTCCAACCTAAAGTGCAATGCAAGGAATGCGGTTCATGGTTGAAGGATAAGAATAGTCTTCGAAAGCACATGTATAGTAAACATGATGGTAAAACCCACGACTGTAAAATTTGTGGCAAAAAAACTCCATCATATAGTGCTCTGTATAGTCACATGAAATATATGCATGAGTTATCTGCAATGTTTCATTGCACATTTTGTGATAAGTCATTTAAGAAAGCTATCAAACTGAAGGAACATGTGGCAACACACACTGGAGGATTTCTTTATACATGTCCACATTGCCCAACAACGTTTAATGCAAAGACCAATATGCACTCTCACCGAAAGAAAATGCATCGAGAAGAATGGGAGGCAAATAGGCGTTATGCCAAAACAGCACCAACTGACGAAGCAATCTGA
- Protein Sequence
- MVCRLCLNKSDDSIAIFNEEKIQKYITKFLQLELSPDDPVSKVICANCWQQLDNFQKFCLQIEEAQKSLKILADNLVQEAQKDFVKDLSPVKEEDPAEEFNEDACDYEDLLPCLEEDILKVENNSDEENTAPKPATSNSPEIKESIPTRRLREKRKTIVKETNEKSETTEEEEDEEEEEEKEEQSKNKRAVANAKRKYYRAKKDGQNTREENKTGRAKKLSRAMLLSREQDAIIKKYMKLSCDICSIDLSDFNDLQNHFRFVHNRTGYAVCCKKKLKNRGLTVDHINAHNNPDYFKCKECGKVMSDRFCMQRHKLTFHPTEELKTFQCSYCPEKLASQYLLDLHTIKHVPEEKCTFICKECGKGFPTNSTLNSHIKRKHSTAYDRMCEICAKLFRHKSAFERHMEEHKGIVHPQVQCTECGSWLKDIQSLRKHMNNKHDEKTHICNICGKNSTSKSALQSHIKYMHEITAIYKCSFCEKSFKKAIKLKEHVATHTGEVLYTCPHCPTKFNAKSNMHSHQGAYYNVDIQDRLDEEISKVPLLIGEEKKESIPATNDSSQAEKSIPLRRVTRRSIIKIPDHTTAPEVKTEKRKRAKIKEHESSEDEVEIPCNANAKRTGSRSKKGERKNRKEKESRSEKFLKNMKTTKENDAFIQKHMKLSCDICSINFPDFTKLKYHFRIVHQRRGYVVCCNRQLKKRGLIVDHIYVHNDPEYFKCTECGKVLSDRSCLQRHNILFHQAEELKTFQCTHCPKKFPTKKLLDLHSVHHNECTFICSECGKGFPTKATMNVHFKRIHSTLCDRMCEICAKLIKGKAAFERHMEEHEGIVQPKVQCKECGSWLKDKNSLRKHMYSKHDGKTHDCKICGKKTPSYSALYSHMKYMHELSAMFHCTFCDKSFKKAIKLKEHVATHTGGFLYTCPHCPTTFNAKTNMHSHRKKMHREEWEANRRYAKTAPTDEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664274;
- 90% Identity
- -
- 80% Identity
- -