Eeli013491.1
Basic Information
- Insect
- Epistrophe eligans
- Gene Symbol
- -
- Assembly
- GCA_951394125.1
- Location
- OX596030.1:4299861-4302014[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.001 6.5 7.5 0.1 22 45 222 245 217 248 0.86 2 4 0.003 19 6.0 0.0 22 44 250 272 247 277 0.89 3 4 0.0019 13 6.6 0.1 26 47 338 359 329 364 0.84 4 4 0.0043 28 5.4 0.0 21 45 361 385 358 391 0.90
Sequence Information
- Coding Sequence
- ATGGATGTCTGGGTAAAAGCTGAGCCAGAAGCCCATCATATGATTGGGTTAAGCAACGGTATGCAATATGCTCCATATGAAAATTTTACACATTATCCTCCAATGCAACCAAATGCACTGGAACCACCCGTATTTCAATATCCTCCGAATGGCTACGATCTTCACCATCAACATATTCTTCCTCCACATTCTCATCCTCATCCTCATTCGCAACAGCAATATTATCACCAACCGTCGGCACCAGATGAAACTATTCATCACCACAGTGGCACATTTGAACAGAATAACACTTACGAGGAGTTAGATCCAAACCAAAAGTACGAGTACCATGAACCTGATGAGAATTTCATTTCAATCGATGACGCCAAAGTTCGGTCTTTTCTGGTGGATTTGGTTCataaagaaacaaagaaaaagaaagaggaTGAAAACCTCGAAGCTCAACGGAAGTTGGAAATCAAACCCGAAGAGGAAGCGAAACCAATTCATCAGCAAAGCAGTAGTAACGGCGATGGTCTAAATGAGAGCGATGAAAGTACAATTCAAGAAGTTGATTACGACGATGATGGCGAAATGGTTCTTTTAGATTCTGATGTTGATTATATCGATGAAAACGAGGAAGGTATAGAGCTAAACTGGATCGATTTGGAGCAGAAGGCACAGAAACAATCCATTGAGTGTTTTCTTTGCGGAAAGAGCGTTGCTTCTAGTTATAATCTTCGAAGACACATGATGATCCACACAGgTGAACGTCCTTTCGGCTGTGACATGTGTTACAAACGTTTCCGCGAATTCAGTGACCTGAAAAAACACCGTCGAATACATTCAACTCAAATGAACTTCAAATGTATGGTATGTCGTGTCAATGATCCTTCTATATACGACCCAACAAAATGTGTTGCTTGCGACAAAAGTGCTTCGGGTGATGGTGTGCAAGATATGGCCGACCTACTACTGGATAGTGTACCAAATCTAGTATCACCGTCCACTGCTGGTGGCAAAAAGGAATTTCAATGTCCAATGTGTAGTCGTATCTTCGGTACACGACACAATCTAAAACGTCATTTTATGATTCACACCGGCGAGAAGCCATTCAGCTGCACTATCTGCCAAAAACCCTTCCGTGAAGTCTCCACACTGAAAAAGCACATGCATACCCACACTCGGGTAAAAGTGTACAAGTGTAGTTTGTGTCGTGAAAAATTCACCGACTACGATTCATTTTTGGAGCACAAGGATACCCATCCAAAGAAGAATTCGCCGGCTAAAAGAATGAGAGGCTTAAAAGGACACGAAATGCAAATCAAAAGGCGACGCAGTGACACCGAATCAGCAATAGCCGATGATGATGAGGAATTCGAATGTCCAGAATGTGGAGAAAAGTCATCCTCCATTGAACTCTATGCCGATCATATCAAACAACATGATTCATCGGTTGAATTTCAGTGTTATATTTGCAAGCAAATGTTTGAGTCAAGGGACTTATTGGTTGCCCATTTCTCTATtcatgatgttgatgatgaatCAAGTGCAGATGCATAA
- Protein Sequence
- MDVWVKAEPEAHHMIGLSNGMQYAPYENFTHYPPMQPNALEPPVFQYPPNGYDLHHQHILPPHSHPHPHSQQQYYHQPSAPDETIHHHSGTFEQNNTYEELDPNQKYEYHEPDENFISIDDAKVRSFLVDLVHKETKKKKEDENLEAQRKLEIKPEEEAKPIHQQSSSNGDGLNESDESTIQEVDYDDDGEMVLLDSDVDYIDENEEGIELNWIDLEQKAQKQSIECFLCGKSVASSYNLRRHMMIHTGERPFGCDMCYKRFREFSDLKKHRRIHSTQMNFKCMVCRVNDPSIYDPTKCVACDKSASGDGVQDMADLLLDSVPNLVSPSTAGGKKEFQCPMCSRIFGTRHNLKRHFMIHTGEKPFSCTICQKPFREVSTLKKHMHTHTRVKVYKCSLCREKFTDYDSFLEHKDTHPKKNSPAKRMRGLKGHEMQIKRRRSDTESAIADDDEEFECPECGEKSSSIELYADHIKQHDSSVEFQCYICKQMFESRDLLVAHFSIHDVDDESSADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00665135;
- 90% Identity
- iTF_00335374;
- 80% Identity
- iTF_00664350;