Echr007869.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- PRDM7
- Assembly
- GCA_951392215.1
- Location
- OX595840.1:14411679-14423760[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0016 24 5.9 0.0 21 44 529 552 523 556 0.90 2 9 0.00038 5.8 7.9 0.0 21 46 557 582 553 588 0.86 3 9 0.014 2.1e+02 2.9 0.1 21 44 585 608 581 612 0.79 4 9 0.00041 6.2 7.8 0.0 21 47 613 639 605 646 0.84 5 9 0.12 1.9e+03 -0.2 0.1 21 43 641 663 636 668 0.73 6 9 0.0027 41 5.2 0.0 21 46 669 694 661 700 0.85 7 9 0.00039 5.9 7.8 0.0 21 46 697 722 693 729 0.86 8 9 0.09 1.4e+03 0.3 0.1 21 44 725 748 721 751 0.79 9 9 0.0087 1.3e+02 3.5 0.0 21 45 753 777 745 783 0.80
Sequence Information
- Coding Sequence
- ATGAGTCAACGCAATTTGCGCAAGAGGCCGCGAATAAGCTACTACGAGCCAGAAGAACCCGATTTGGACGAATATGTGTTTTGCGAAAAATGCGGTGACTATGTATACGAGTACTGCTCTATACATGGACCCTTGCTAGTAATACCAGATGACAAGGTTCCTGCCAAACCCAATGTCCCATCATACGTCCCTCGCGCCGCGCTCAGCATTCCCCACGTGTTCCTACACATCACCTATTCCATCATACCAGGTGCCGGGCTGGGCGTGTTCTCATCGATGACGTTGCCTTCTGGGGTGCGCTTCGGACCGTACTGCGGTCAACGCACCGAAGTCGTGGACTCGCCCTACTGTTGGCAGATATATGACAAGAACCGTAAGCCGTTACACTGCGTAGACGCCGCGGATGCTAACAAGTCCAACTGGATGCGATACGTCAACTGCGCTCGCCACTGGAGGGAACAGAACCTCGTGGCGTACCAGTATCAAGGAGAACTCTACTACAGAACGATCAAAATAATACCTCGCTTCACGGAGCTCATGGTGTTTTATGGGAGCGAGTTCGCGTGCGAACTAGATGTCGACCTCGGCAAGTACAACTCGCCGGTTGGATACGCGCAGAAATTCGGTGCACCAGTCGCTAAGAAACGTAAACTTAACGACGATAAGATGAAAACAGTGCCACAAGAAATACACAATGAAAGCGTTGAGGCATCTTCTACCAGCGAGCCGGAAACAAATCAAGCCACTGACAAAGGAACTATTATAAACAACATATCAACAGAAACTCAGCGACAAGAACATGACGAGGCTATATCTAGCGCTCAAAACAATATGTCGGTGAAAACAATCGCGGGCACTAAAGCTAAGAGAGGCccaactaaaaataataaaacaactaagAACATTAAAACAactaagaataataaaatatctaaaagcaataaagaaaataacaataataaagcaACTAACAACAATAATGCAACCAAGAACAATGAAGCATCTAACAACAATAAAGCCACCAAGAATAATGAAACATCTAACAACAATAAAGCCACTAAGAATAATGAAGCATCTAACAACAATAAAGCAACCAAGAACAATGAAAAATCTATCAACAATAATGCAACCAAGAACAATGAAGCATCTAACAACAATAAAGCAACCAAGAATAATGAAAGATCTGAGAAAGCTCAAACTAACGATGAAAAAACATGTATAGTCCAATCAATCAATCCTAACCTTGAGATACCAAAAAGTAGAGTTAACAATACCACGAATAACGGTCGTGTAGAGTCGAAAGTGAGTCGTGAAACGAGTACAATTGCACCGGATGTATATGTCTATTGTAATAGTTGCAATAAGAGATGTATCTCAAAGCAAGAAATGCAGAAACACATGAGGTTTCATGATCTCAATCGTGCTTATGCTTGTGAAGTATGCAAGCTGCGATACACTTCATCCATTGGTTTAAGTTTGCATATTAATAATATTCACACAAAACGCAAGACTTACGCATGTAATTTATGTGGTCAGAAATATACTATATGTAGTTATTTAAAAGTACATTTGAGAactcataccggagaaaaaccgTATGCCTGCGAAATATGCGATAAAACATTCACTCTAAGTAGTAATTTAAAAACGCATATGAGAACTCACACCGGTGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTCACTCTAagtagtaatttaaaaaagcatATGAGAACTCACACCGGAGAAAAGCCGTATACCTGCAAAATATGCGATAGAACATTCACTGATTATAGTAGTTTAAAAAGTCATATGAGAACTCACACCGGTGAAAAGCCGTATGAATGCGAAATATGCGATAGAACATTCACTGATGGTAGTAATTTAAAAAGGCATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTCTCtcgagatgatattttaaaAATGCATATGAGAACTCACACCGGTGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTCACTCTAAGTAGTGATTTAAAAAAGCATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTCACTCAAAGTAGTGATTTAAAAATGCATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAATATGCGATAAATCATTCACTCATGGTAGTCATTTAAAAACGCATATGAGAACTCACACCGGAGAAAAGCCGTATGCCTGCGAAATATGCGATGCAATGTTCACATGGAAATCAAGTTTGAAAATTCATATAATGAAGATACATCTGAGGGATAAATAG
- Protein Sequence
- MSQRNLRKRPRISYYEPEEPDLDEYVFCEKCGDYVYEYCSIHGPLLVIPDDKVPAKPNVPSYVPRAALSIPHVFLHITYSIIPGAGLGVFSSMTLPSGVRFGPYCGQRTEVVDSPYCWQIYDKNRKPLHCVDAADANKSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPVGYAQKFGAPVAKKRKLNDDKMKTVPQEIHNESVEASSTSEPETNQATDKGTIINNISTETQRQEHDEAISSAQNNMSVKTIAGTKAKRGPTKNNKTTKNIKTTKNNKISKSNKENNNNKATNNNNATKNNEASNNNKATKNNETSNNNKATKNNEASNNNKATKNNEKSINNNATKNNEASNNNKATKNNERSEKAQTNDEKTCIVQSINPNLEIPKSRVNNTTNNGRVESKVSRETSTIAPDVYVYCNSCNKRCISKQEMQKHMRFHDLNRAYACEVCKLRYTSSIGLSLHINNIHTKRKTYACNLCGQKYTICSYLKVHLRTHTGEKPYACEICDKTFTLSSNLKTHMRTHTGEKPYACEICDKTFTLSSNLKKHMRTHTGEKPYTCKICDRTFTDYSSLKSHMRTHTGEKPYECEICDRTFTDGSNLKRHMRTHTGEKPYACEICDKTFSRDDILKMHMRTHTGEKPYACEICDKTFTLSSDLKKHMRTHTGEKPYACEICDKTFTQSSDLKMHMRTHTGEKPYACEICDKSFTHGSHLKTHMRTHTGEKPYACEICDAMFTWKSSLKIHIMKIHLRDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663301;
- 90% Identity
- iTF_00663301;
- 80% Identity
- iTF_00663301;