Echr000172.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- lolal
- Assembly
- GCA_951392215.1
- Location
- OX595833.1:1642825-1651570[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-17 1e-13 51.5 0.0 1 42 342 384 342 387 0.95
Sequence Information
- Coding Sequence
- ATGGCGCAGCAGTACAGCTTAAAATGGAACAACCACCAGCCAAACTTCATTTCCATGTTCGCGATGCTGCGCAATACACAGGCGCTGGTAGACGTGACCCTGGCGGCGGAGGGCCGGCACCTGCACGCGCACAAGATGGTACTGTCTGCCTGCAGTCCGTACTTTCATTCGCTGTTCGTTGAGAACCCCTCGCAGCACCCCATAGTGATCCTGAAAGACGTAGCGTACTCAGACCTGCGCACCATTGTCGACTTTATGTACTACGGCGAAGTCAACATCACACAAGAAGAGCTGCCTCAGATGCTGCACTCCGCGAAATCTCTCAAAGTAAAAGGTCTCACAGAGACGGAATCAACATCAGTAATGCGCTCACAATCGTCCGACTTCCCGTACGAAACGTCCGGGGACACGTCCGGCGACCAGACTGGCGAAACGTCCGGGGAACAAGCTGGCGAGCCATGCAACGAGCCGTCCAACGAGCCATGCAACGAGCCCTCCGCGGAGGGCGAACTGCAGAGACGGACGTCGGCCTCACCAGCTAACTCGCCTTCTGCGAAACGACGACGACGCAGAAGAAGTTCGAACGGCTCCACCTCTCTCAACATGGTGGGTGAGGAGGCACGTGAGGACCACCAGTCCATGGAGATCGTGCGGGAGGGCATCACAGTGAGCAGCCTGCCGCGGCGAAGGGACTTCTCTCACGATGACAACACCCCGCAACAGAATGCCCCGCCACAGAATATAAGTATAGACGACCTGAGCGTCGACCACAATCCAGCAGGCATGCCACAAGGAGGTCAGTGGAGTATGATGGAGCACACATACCCGCGCTATACGAACTCGTGCTTCGGCGGCGGCGAGACGGGTGGCATGTACATGGGCGGCATGATGCACATGGAGGGCGAGCTGGCTTACGCGCCGCCTGCAGGGCTGAGCTGCGcaccgcccgccgcgccgcccaccgcgccactcgCTGAGCCTCCCGCCGCGCCGCCCAAGCGCCGCCGCACCACGAACCCACAGAGCGAGGAGAACTTCCAGCGCGCGCTCGAGGCGGTGCGCGTCGGCGGGATCGGGTTCTGCAAGGCGGCGCGCATGTTCGGCGTGAACAATCGCACACTCTGGCTCGAGTACAAGAAGAAGGGGTACCCCAACACGCGGCCCAGCATCAAGAGTCGCATCAAGCGCGAACACGCGTCGCCACCGCCGCTCAAGGACGAGCTGGCCGCCGGCACCGGCGCGCCCGCCGCTGACCACCACATGGCGCTGCTCTGCCATCCGTCGCACCCGCACCAGCTCTCTGTCGGCTTCGTGGAGTCGCGCCCGCTCGATCTGCCGCTGCAGGGCATGAACATCCTGGGCGGGCTCAACTTCAACTCGATGCAATAG
- Protein Sequence
- MAQQYSLKWNNHQPNFISMFAMLRNTQALVDVTLAAEGRHLHAHKMVLSACSPYFHSLFVENPSQHPIVILKDVAYSDLRTIVDFMYYGEVNITQEELPQMLHSAKSLKVKGLTETESTSVMRSQSSDFPYETSGDTSGDQTGETSGEQAGEPCNEPSNEPCNEPSAEGELQRRTSASPANSPSAKRRRRRRSSNGSTSLNMVGEEAREDHQSMEIVREGITVSSLPRRRDFSHDDNTPQQNAPPQNISIDDLSVDHNPAGMPQGGQWSMMEHTYPRYTNSCFGGGETGGMYMGGMMHMEGELAYAPPAGLSCAPPAAPPTAPLAEPPAAPPKRRRTTNPQSEENFQRALEAVRVGGIGFCKAARMFGVNNRTLWLEYKKKGYPNTRPSIKSRIKREHASPPPLKDELAAGTGAPAADHHMALLCHPSHPHQLSVGFVESRPLDLPLQGMNILGGLNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119531;
- 90% Identity
- iTF_00663202;
- 80% Identity
- iTF_00663202;