Ealt010025.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751385.1:8351426-8353857[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0019 26 5.6 0.0 26 52 213 239 201 240 0.87 2 4 0.00028 3.8 8.3 0.1 24 51 239 266 237 269 0.88 3 4 0.0014 20 6.0 0.0 16 46 322 352 319 355 0.89 4 4 0.00017 2.4 8.9 0.1 22 48 356 382 353 385 0.89
Sequence Information
- Coding Sequence
- ATGTCGAACAAGTGCAGAGTTTGTCTCTCTGATGGGGCTCAATATTCTATTTTTGAGAACATTGAAAGTAAAGATAGCATTCATTCAAAGCTCTTCTTATGTTTGCAGGAAaagATTGAGGACGTAGAAGGCTACCCTCGTAATATATGTGAAACATGCAATGACATTCTAAATAATACAATCAACTTTATTACAAAATTCCGCACAAGCTGTAAACTCTTGCAAAGCAATatcataattaaaaaggaaatctGTAATGGTTCCGATGATGAATTTATAAAAGAAGAGTATGAAGTAGAATTATGCAAAGATGAACCTGACACTGATTGGATAGAACCATTTGTATCGTGGAAACCTCTGgcagaaataaaaaaacgtgAACCAAGTCTCACAGATATTAAGGAAAAATTGAAGGGGCTAAAGGAAATAAATATCAAAAGAAAACCCACTCAGAAGAATAACAAGGGGACTTCCAAAATAGCCTCGTCTATATTAGAAGCGGATGTTGACTGGAATGGAGAAAGTTTAACATCAAATTCTATGAAAGAACCCAAAGCAGATAAACCAAGAGAGCCCcgaaaaaaatttaatttaattttcccAAAACCACCAAAGCAGCCACAAGATGGTTCAGGTTTGTGTGACATTTGTGGGGAGGTATTTAAAGAtaaagaaaaactatcaaaacacAGGAGAACACAACATTTTAATGTCCCACGTGAATGCCCCAAatgtaaaaaagttttaaaatctaATTACAACTTAGACAAGCATATGAAGAGAATTCATGGAACAAAATCGTATGTTTGTGAACATTGTGGGAGAGCATTTGCGTTCAAACCGGAATTGTCTAAACATATGAGCGTGGTCCATTTACACACAAGTAAAAAACGTGTAAGAAAATTTGAATGTAATAAATGTGATAAAAGTTTTACAAATGCAAAATCTCTGCTCATACACGAGAGATCAGCACACACAGGGCACCGGCCAGCTGAATGCATAGTGTGTGGTGCCAGTTTCTACCATGAAGACTATCTTAAGGAGCATTTAAGGTTGCATACAGGAGAAACTCCATTCGAATGCCCTATCTGCGGTCGCGGATACGCACAGCGCGGGAATATGAGAAGTCATGTATCACATAATCACCGACTGGCAGACCTGAGCCCAGAAGTTTTGAAGAATTTGAAACCATCATGGTTCAAATATCTAAAGAaaccttag
- Protein Sequence
- MSNKCRVCLSDGAQYSIFENIESKDSIHSKLFLCLQEKIEDVEGYPRNICETCNDILNNTINFITKFRTSCKLLQSNIIIKKEICNGSDDEFIKEEYEVELCKDEPDTDWIEPFVSWKPLAEIKKREPSLTDIKEKLKGLKEINIKRKPTQKNNKGTSKIASSILEADVDWNGESLTSNSMKEPKADKPREPRKKFNLIFPKPPKQPQDGSGLCDICGEVFKDKEKLSKHRRTQHFNVPRECPKCKKVLKSNYNLDKHMKRIHGTKSYVCEHCGRAFAFKPELSKHMSVVHLHTSKKRVRKFECNKCDKSFTNAKSLLIHERSAHTGHRPAECIVCGASFYHEDYLKEHLRLHTGETPFECPICGRGYAQRGNMRSHVSHNHRLADLSPEVLKNLKPSWFKYLKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661627;
- 90% Identity
- iTF_00661627;
- 80% Identity
- iTF_00661627;