Ealt012354.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751388.1:2637634-2648293[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.39 26 6.1 0.1 3 23 110 130 108 130 0.96 2 17 0.0086 0.58 11.3 0.5 2 23 134 156 133 156 0.89 3 17 1.8 1.2e+02 4.0 0.1 3 23 406 427 404 427 0.93 4 17 0.37 25 6.2 0.2 1 20 435 454 435 456 0.92 5 17 0.96 64 4.9 0.4 2 23 466 487 465 487 0.91 6 17 0.047 3.2 9.0 2.7 1 23 535 558 535 558 0.95 7 17 1.8 1.2e+02 4.0 1.6 1 19 635 653 635 658 0.79 8 17 0.59 40 5.5 1.2 1 23 663 686 663 686 0.93 9 17 9.3e-05 0.0063 17.5 2.7 1 23 692 714 692 714 0.97 10 17 6.6e-07 4.5e-05 24.2 1.8 1 23 721 743 721 743 0.98 11 17 4.4e-05 0.0029 18.5 1.4 1 23 748 770 748 770 0.96 12 17 0.015 1 10.5 1.9 1 23 776 798 776 798 0.95 13 17 2e-06 0.00013 22.8 1.6 1 23 804 826 804 826 0.98 14 17 4.1e-05 0.0028 18.6 2.3 2 23 833 856 833 856 0.96 15 17 0.002 0.13 13.3 0.6 2 23 866 888 865 888 0.96 16 17 0.0082 0.55 11.4 0.6 1 23 893 915 893 915 0.95 17 17 0.00058 0.039 15.0 2.2 1 23 921 944 921 944 0.98
Sequence Information
- Coding Sequence
- ATGTCATCTGACGACTCGGACGATGAACCGTTGGCCATATTGGCCTcgaaaaaaagtaattatgaaGTCGAAATCGTTCCCGTTGTACCTAATAGGAGAGGACGTAAGAAGAAAGCCATTGCCACGAAGAAGACCTGTGATGTGACCATTGAACTGCAATACCGGGATGATCTCTCATCTGTTACTGTGGAAAGGCCCACTGATGTCTGGCTGTACTTAAAAGACTTGAATCCCAATGGTCCGTATAGCTGTTTGCTCTGTTCGGAATGGTTTATCAACAAGACTAAGATAGTCATTCATTATGTGGTCAATCATAAGAAGGATTTCTGTGGAATATGCAGATATTTTGTGCCTGATAGGGAATCATGGCAGGCACACTTGAAGTTCCATATACCATGGCAGTGCTCTCAATGCCCCAAAACATTTGAAAACGAAATATTTTTACGATCTCACTTCAGTGAAGAGCACAATCTTGTTCACTGTCGGCTTTGTTACACTCGCCTCATAGACGGCGAAGATTACCATGTACATTTGTACCAGAAACACAGTGTCACTAATGTTTCCTGTAAGAACGAGGAGTGTTTCTGGGAATTTGAGCAAGAAGACTTTAAATTTCTCTGCATACTTTGCTCTAAATCCAGCAATGACATACAGACCTTCTCCAACCATTATATGGCATACCATCACCTCACATTAAAATGTTTAGCTCCGCTGATCTCTGGTAAAAACTGGAATTTCCCAGTTCAAGGAGCTGAAGTCAGTATAGACTTCCTTGAAAGGCAATTAAAAGAATATGACAAGTATGGCTATTTAgatttagacaaaaaaaaagatagatTAATAGAAAAGGATGAAACTGTAGCTCTGACCAGAGTGATGGCTCAAGAGTATCAAACTGAATTGGTGAAAAATGAGCTGATTGACGAGCCGGACGAGAATACTAGTACTGCTAATGATGACGATGGTACCGCTGATGATGATACTGAAAAAAAAGATGAATCAGGAACAACAGATGATAAAATAGACAATGAACTATATAAAACATACAAAGGCGATGAAGATTTTGACACAGCACAAGTTGAAATCATTGTTGTACATAAATGTTATTTTGATTATATCGAAGACACACTTAACCACATCAACTCTTACGTGATGCCGACAGTATCATCCATCAATTACAGTCTCTCTGAGGTTGATCATCCAGTCTTCATAAACTGTGAATTATGCAAAATTCAGTATGCAACTATTAACCCCTTCACGCAACACATGGTTAAAATCCATGGTTTTAAAAATGTGCCATTATTCTCTTGCCGTATTTGTGCTACAACATTTGACAGTATCTCTGAGCTAGGACAGCATGAGATGCATGAATTGGGTGATTTTGAGGATCTCTGGATCTGTCAGTTTTGTGAGAAGGAGTTTGATGATCGAGGCAGGACTCGGATGCATCTTACTGAGCACTGGAATGTGATAGAATATGACAATTGCTTTAGTCCTCACTTGGGTTTCAAGTGCAAATTCTGCCCCACTCTGTTCTGGAACGAGAATGACCGTGAGAGTCATACAGTGAAGGTTCATTTTCAGAAACACACAGAGAATTATTATAAGTGTGAGAGCTGCGATCAGCTGTTCAGTGATAAGATTTGGTTTATTCACCACTACTTCTCACAACACATGAGAAACGACGAAGTACCtgtcggtacctacctactcaagtGCTGTTTCTGCTGTGTTGTCTTCCCTAATATAGACTCTATACGGCATCACTTCAATACAAAGCATCCTGAAGCTAGGAGGATATTCTGTGCGCTAGACGCTTGTCAGTATAAGCCGTTTAGTCATCGGAAGTCTTTCCATTTGCATTTGAAGTCATTCCACGGCACCAAGAAGCGTCCAAAGACCTTCCTCTGCCAGTTCTGCGGCAAGGAGTTCGGCAGCCAGCGATCTTGCAGCGCGCATAGTGCGCAGGCGCACGGACCAGGCCGGTTTTCATGCAATATATGCAAGGAAATGTTGCATACTGCTGATGAGAGGAAAATCCACTATCTCCTCCGACACCCCGGCCGGCATCCATTCCAATGTCGCGACTGCGATAAGTCCTTTCAATACAAGTCATCTCTATATCTACATCGACAAGAACACGCGCCAAACAAACAGGATTATAACTGTACTTACTGCGGGAAGGTGTTCAAGaAACGCGATTCTTTCCGGGAGCACATGATGATTCACGAAGGGCCTAAACACGCGTGTTCATACTGCCCCATGGTGTTCGTCCAACGCTCTAACATGCTACGTCACGAGAGAAGACATACGGGAGAACGGCCTTACGCATGCCAGTTCTGTCCCAAAACCTTCTCTGATAAAGGTGCCTGCTCGTCTCATTCAAGAATCCATCAGAAATTGCCGGCCTTCCCATGCATGTATTGCGGACAAACCTTTGTGCAGAAGTCGAAACTCACTTACCATATCAGAAAGCATACTGGAGAAAATCTAGAAACGTGCCCGCGTACAAACTGCGGCAAAATATTCACGAGTGCGTGTTCTCTACGCGAGCATATGAAAACGCACGAGAAGAAACACGTGCTGGACCCTGTTAAATGCCCGCTTTGTTCGAAGTCATACCAAGACGAGAAGTATATGATGCGACATTTACGCGCGACTCACACTAACGCAGCGTTCCTTTGTCCGATTTGTAAGAAGAAATTACACAGCGCGGCTTCATTGAGAGATCATGTTGTTACACACAGCGACTCTAAGGCTTACACGTGCAACCAATGCTCAAAAGCCTACAACGTGAAACGTACAATGATTAGGCATCTTCGTCGGAGACACAGCGTCAAAACGTCCACTGGCCTATCCGATTACTACAGCAAACTGGACCCTAGAGAATGCAACCTTAACCTGGACGATGAAACTATGAACAGCATTTTCGGACCCCCCAAACGTAAAGTCGATGTTGTCAACTACACTGCAATGAATCGATTCAATTTCCGAAAGGAGAACTCTCAGAGTGGAGAAAGTGAGGCTGGGATTGTCCCGATAGAAAGTGTTCAAGTCAAGATAGAGTGCGAGGAACTTGAAGAAATGGAGAAAGAGGATGAGTTGCAGCCGACGGACTTTGTTAGTGTTAAGATTGAGTGTACGGAGGAGAATGagaatgaaatggaaaatagTGAAGAGGAGTACTGA
- Protein Sequence
- MSSDDSDDEPLAILASKKSNYEVEIVPVVPNRRGRKKKAIATKKTCDVTIELQYRDDLSSVTVERPTDVWLYLKDLNPNGPYSCLLCSEWFINKTKIVIHYVVNHKKDFCGICRYFVPDRESWQAHLKFHIPWQCSQCPKTFENEIFLRSHFSEEHNLVHCRLCYTRLIDGEDYHVHLYQKHSVTNVSCKNEECFWEFEQEDFKFLCILCSKSSNDIQTFSNHYMAYHHLTLKCLAPLISGKNWNFPVQGAEVSIDFLERQLKEYDKYGYLDLDKKKDRLIEKDETVALTRVMAQEYQTELVKNELIDEPDENTSTANDDDGTADDDTEKKDESGTTDDKIDNELYKTYKGDEDFDTAQVEIIVVHKCYFDYIEDTLNHINSYVMPTVSSINYSLSEVDHPVFINCELCKIQYATINPFTQHMVKIHGFKNVPLFSCRICATTFDSISELGQHEMHELGDFEDLWICQFCEKEFDDRGRTRMHLTEHWNVIEYDNCFSPHLGFKCKFCPTLFWNENDRESHTVKVHFQKHTENYYKCESCDQLFSDKIWFIHHYFSQHMRNDEVPVGTYLLKCCFCCVVFPNIDSIRHHFNTKHPEARRIFCALDACQYKPFSHRKSFHLHLKSFHGTKKRPKTFLCQFCGKEFGSQRSCSAHSAQAHGPGRFSCNICKEMLHTADERKIHYLLRHPGRHPFQCRDCDKSFQYKSSLYLHRQEHAPNKQDYNCTYCGKVFKKRDSFREHMMIHEGPKHACSYCPMVFVQRSNMLRHERRHTGERPYACQFCPKTFSDKGACSSHSRIHQKLPAFPCMYCGQTFVQKSKLTYHIRKHTGENLETCPRTNCGKIFTSACSLREHMKTHEKKHVLDPVKCPLCSKSYQDEKYMMRHLRATHTNAAFLCPICKKKLHSAASLRDHVVTHSDSKAYTCNQCSKAYNVKRTMIRHLRRRHSVKTSTGLSDYYSKLDPRECNLNLDDETMNSIFGPPKRKVDVVNYTAMNRFNFRKENSQSGESEAGIVPIESVQVKIECEELEEMEKEDELQPTDFVSVKIECTEENENEMENSEEEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267542;
- 90% Identity
- iTF_00662549;
- 80% Identity
- -