Ealt009541.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- ZEB2
- Assembly
- GCA_963565295.1
- Location
- OY751385.1:382743-385366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00072 0.048 14.7 0.2 3 23 152 172 151 172 0.98 2 10 1.6e-05 0.0011 19.9 0.9 1 23 178 201 178 201 0.97 3 10 1.2e-06 8.2e-05 23.4 0.3 1 23 209 231 209 231 0.98 4 10 0.00046 0.031 15.3 1.8 1 23 237 259 237 259 0.98 5 10 0.001 0.069 14.2 1.8 1 23 265 287 265 287 0.97 6 10 1e-06 6.8e-05 23.7 0.4 1 23 293 315 293 315 0.98 7 10 3.4e-06 0.00023 22.0 2.4 1 23 328 351 328 351 0.97 8 10 0.17 12 7.2 0.6 2 23 382 404 381 404 0.93 9 10 0.052 3.5 8.8 0.3 1 23 410 435 410 435 0.96 10 10 0.00072 0.049 14.7 0.9 1 23 441 464 441 464 0.92
Sequence Information
- Coding Sequence
- ATGAATTACGAACTGTGCCGGCTTTGCTACGAAAAGGAGGCAAACTcaagcatttttttaaatcaagaaGACAGTGGCACCTTTACCAAAATTGTGTACTGTTGCAAATCTATAAGTTTGCAAGAAAATGATGGTCTCCCAGATAAAATCTGCAGCAGCTGCGACCGAGACCTGGAACTTAGCTACCATTTCCTGCTCATGTGTGAGGAGTCTGATAGGAAGCTCAGATCGATACTTACAGAAACATTTGTCTCGACTGCTGATATCCCAAAAACTGAGGTCAAAAATGAAGATATTGATGATGACCATCAACACAGGGATGACTTGTTCATATTCACGGACTTTAAATCAGATTCGCCGCTATCTGACAAGGATGCAGTACATATTGAAGATAAAGTTAGTATTCAAAGCAGGCCCAAAAAGAGGGTGAGGTTCAAAAAGGAAAATCGTGATTGTTCAGTCTGTGCTAGGAAATGTCCGAGCGCCTCCGCACTAGCCGTACACATGCGTATCCACACGAACGAGAAGCCTTACCAGTGCCCATCCTGTGTCAAAAAGTATAAGGATAGCGGGACATTGAAACGCCATATTGAGAGAAATCACTTGCAGCACCGAGAGAGGCGTTTCATTTGTGAAAACTGTGGAAAGGGATTCTACTCCAAAAGTGATATAACAATCCATATGAGAGTCCATACAGGAGAAACCCCATATTCTTGTTCCATTTGTCTCACAAGATTCACACAGCTGAGTGCAATGCTGAGACATAAGAAACGCCACACTGGAGCAAAGACCCATGTCTGTTCAACTTGTGGCAAGCTGTTCTGGACCAAAGAAGAGCTGAAGAAACATTACAGTGTCCACAATGATGTCAGGAACTTTGAATGCCCGATTTGCAATGTGCAGTTTAAGCAAAAGAGTAATATAAAGAAGCACATGGCTATCCACGCTGACCCTAACAGATATggagtaattcccaactcATATGTGTGCAATCACTGCGGACAAACATTCAACTTGAAAGGGAACCTTAAATCGCACATCAGCAGGAAACATTCCGAGAAATCTGGCTCTTGTAGTATATGCTGCAAAAATGTGTCAAACATAGAAATTCACATGTGGAGGCACACGGGACAGAGGCCTCTTAAGTGTGAATTCTGCACAAGCAGCTTCTATGAACTGAAAGCTTTGGCTCTTCATATAAACTTCAAGCACAAGAAGACAGACAGGTTCAAGTGTACCATGGAAGGTTGCACCCAGGGTTTCCCTTCTAAGCCTATGATGATGTACCACATAGCGAGGTTCCATGACATGCAGACTCCATACCCTTGTGACAGGTGCTCACGAGGCTTCTACAGGAAGAATGACCTCTCCAGACATAAAATAGGCACTCATAAGGAAAGACTGCTCTAA
- Protein Sequence
- MNYELCRLCYEKEANSSIFLNQEDSGTFTKIVYCCKSISLQENDGLPDKICSSCDRDLELSYHFLLMCEESDRKLRSILTETFVSTADIPKTEVKNEDIDDDHQHRDDLFIFTDFKSDSPLSDKDAVHIEDKVSIQSRPKKRVRFKKENRDCSVCARKCPSASALAVHMRIHTNEKPYQCPSCVKKYKDSGTLKRHIERNHLQHRERRFICENCGKGFYSKSDITIHMRVHTGETPYSCSICLTRFTQLSAMLRHKKRHTGAKTHVCSTCGKLFWTKEELKKHYSVHNDVRNFECPICNVQFKQKSNIKKHMAIHADPNRYGVIPNSYVCNHCGQTFNLKGNLKSHISRKHSEKSGSCSICCKNVSNIEIHMWRHTGQRPLKCEFCTSSFYELKALALHINFKHKKTDRFKCTMEGCTQGFPSKPMMMYHIARFHDMQTPYPCDRCSRGFYRKNDLSRHKIGTHKERLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267474; iTF_01529459; iTF_00119833; iTF_01528572; iTF_00662463;
- 90% Identity
- iTF_00662463;
- 80% Identity
- -