Basic Information

Insect: Epirrhoe alternata
Gene Symbol: prg
Assembly: GCA_963565295.1
Location: OY751378.1:9310605-9312401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.39 26 6.1 0.7 2 19 176 193 175 198 0.82

2 10 0.0021 0.14 13.2 0.4 1 23 204 227 204 227 0.96

3 10 1.3e-05 0.00091 20.1 3.5 1 23 233 255 233 255 0.96

4 10 4.6e-07 3.1e-05 24.7 4.9 1 23 261 283 261 283 0.99

5 10 6e-05 0.004 18.1 0.0 1 23 289 311 289 311 0.97

6 10 0.00043 0.029 15.4 1.1 1 23 317 339 317 339 0.96

7 10 0.00025 0.017 16.1 1.6 2 23 431 453 430 453 0.95

8 10 0.00031 0.021 15.8 1.5 1 20 459 478 459 481 0.94

9 10 1.9e-05 0.0012 19.7 3.1 1 23 487 509 487 509 0.97

10 10 0.0018 0.12 13.5 0.0 3 23 518 538 516 538 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.39	26	6.1	0.7	2	19	176	193	175	198	0.82
2	10	0.0021	0.14	13.2	0.4	1	23	204	227	204	227	0.96
3	10	1.3e-05	0.00091	20.1	3.5	1	23	233	255	233	255	0.96
4	10	4.6e-07	3.1e-05	24.7	4.9	1	23	261	283	261	283	0.99
5	10	6e-05	0.004	18.1	0.0	1	23	289	311	289	311	0.97
6	10	0.00043	0.029	15.4	1.1	1	23	317	339	317	339	0.96
7	10	0.00025	0.017	16.1	1.6	2	23	431	453	430	453	0.95
8	10	0.00031	0.021	15.8	1.5	1	20	459	478	459	481	0.94
9	10	1.9e-05	0.0012	19.7	3.1	1	23	487	509	487	509	0.97
10	10	0.0018	0.12	13.5	0.0	3	23	518	538	516	538	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATCATCGCGAATTTCCACGCGCTATGTCGCTTGTGTCTGAACAAAAGCGCGCTCACCGTGTCGATTTACGGGGCTGCACCCGATGACGAAGCGAACATATCGCTAACCTCCAAAATAGCGGAGTGTTGCGAACTACAGATTGATCCCAATGATGGCCTGCCAGGAAGGATCTGCTACAAATGTTTGCTGAAAGTAGATAAATGCTCCAAGTTCAGAATTCAATGCATACAGAATGAGAACAGGCTGAGACAAATCACCAACCGAGTCAATGATCTTGATAATTCCAACTCCTCGGAACTTAGCAATTATAACTACAACAACCATGAGCAGAAACCAAAGCCTGAAGATTATATTGTTGAagatagtgttgtaatggtggtgGATCCGAGCCTTGACTATGACTCTTCCGAAGAATCTGAAGGAGTGGAGCAAGTTGAACCAGATGTCACCGAAAGAGATAATAACCCAGAACAAGAAACAATAACAGAGTCATTCTTCAAAAATGTCTCCATGTGTCAGTACTGTGATCAAGCCTTTGTCTCACCTGAGAAGTGTAAAGAACATGAGGTAGCATACCATGACCCAAACCTGCCATACAAATGTGTAGAGTGCAGCCTAGTATTTGCAGAACGCTCACAATATGTACAGCACACTAAACAAGTACATGGCAATGATAAGCCATATCACTGCCCTGAATGTGAAAAATGTTTTGGACGCCGATCTGATTTGAGAAAACATTCTATTGTGCACACAGGCATCAGGCCTTACCAGTGCCATTACTGTTTGAAAAGTTTTTCTCGCAACACAAACCTGAGCAAACATCTGAGAATTCATGCGGGGCATAAACCACATGTTTGTCCATTGTGCCCGAGGAGTTTTGTGGCAAAGGGTGACCTGGCACGCCATGTGCTTGTCCACTCAGGGATGAAGCCCTACAGATGTCGAAAGTGCCCTCTCACCTTTGGTCGCCGAGATAAGCTTATCAAGCATGAAGTCAAGCATGGACCTGTTACTCCAGAACATAACACATACTATGAGAATAACCAGGATATGCATGACATGGTTGTGAATGTGAATCCTTTTAGCAACTTAATGACATCCCCTAATCAGGTGAACACAGATGGATCTCAAGCTGATTATGACCTCCCCCGAGTTCCTGATCATATTTCTGGAGAAAGTAGCTTCAGCAGAGTACAGAAAACTCCCTCCACATCAAAACAACAACCCTCCCCTCCGAAAAAGCCTACACTTGCTAAGAATAGGCCTAAGAATATTAAGTGTCACCAGTGTACAAAGAGATTTTCGTCATTAGATGCATATAAAACTCATGTGTCTATTGCCCACATTGGGTCTAGAGTTTTTCAATGCAAAGTTTGTTTTAAGAAATTTGCACGAAAGAGAGAACTTGATCGCCATACGCCCATCCACTCTGGCATGAAGCCTTTCTCTTGCAGTCAATGTGACAAAAAGTTTACAAGAAAAGACAAGCTTGACAAACATGAGCAGAGTCATGAATGTTTGGTTGTGAATATGCCTTGTATTGAATGTGGTGCCACATTTGAAAAGAAAGCAGATTTGGTGGCTCACATAAAGTCCCATTTCACTGATAACTTTGATGATAAAATCTCACAAATCAAAAAGGAAGATGAACCCGAGTTCCAGCTCGATGAGAATTTTTATGATTTAGAAACTTGA
Protein Sequence: MEDSYIIANFHALCRLCLNKSALTVSIYGAAPDDEANISLTSKIAECCELQIDPNDGLPGRICYKCLLKVDKCSKFRIQCIQNENRLRQITNRVNDLDNSNSSELSNYNYNNHEQKPKPEDYIVEDSVVMVVDPSLDYDSSEESEGVEQVEPDVTERDNNPEQETITESFFKNVSMCQYCDQAFVSPEKCKEHEVAYHDPNLPYKCVECSLVFAERSQYVQHTKQVHGNDKPYHCPECEKCFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLARHVLVHSGMKPYRCRKCPLTFGRRDKLIKHEVKHGPVTPEHNTYYENNQDMHDMVVNVNPFSNLMTSPNQVNTDGSQADYDLPRVPDHISGESSFSRVQKTPSTSKQQPSPPKKPTLAKNRPKNIKCHQCTKRFSSLDAYKTHVSIAHIGSRVFQCKVCFKKFARKRELDRHTPIHSGMKPFSCSQCDKKFTRKDKLDKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKISQIKKEDEPEFQLDENFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_00632992;
80% Identity: -