Basic Information

Insect: Epirrhoe alternata
Gene Symbol: Znf296
Assembly: GCA_963565295.1
Location: OY751403.1:5894801-5899982[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.0011 19.8 0.5 1 23 158 180 158 180 0.98

2 15 0.0001 0.007 17.3 2.0 2 23 185 206 184 206 0.96

3 15 6.6e-06 0.00044 21.1 3.2 1 23 212 234 212 234 0.97

4 15 9.4e-05 0.0063 17.5 0.7 1 23 239 263 239 263 0.95

5 15 3.3e-07 2.2e-05 25.2 1.1 1 23 269 291 269 291 0.98

6 15 1.2e-07 7.7e-06 26.6 0.4 1 23 297 319 297 319 0.98

7 15 2e-06 0.00014 22.7 2.0 1 23 325 347 325 347 0.98

8 15 0.00019 0.013 16.5 1.0 3 23 355 375 353 375 0.98

9 15 1.4e-05 0.00091 20.1 1.6 3 23 383 403 382 403 0.99

10 15 5.4e-05 0.0036 18.2 2.8 2 23 424 445 424 445 0.98

11 15 3.1e-05 0.0021 19.0 0.7 1 23 451 473 451 473 0.98

12 15 1.8e-05 0.0012 19.7 0.2 2 23 480 501 480 501 0.97

13 15 1.2e-06 8.1e-05 23.4 1.0 1 23 506 529 506 529 0.97

14 15 3.1e-05 0.0021 19.0 0.9 1 23 535 557 535 557 0.97

15 15 0.0019 0.13 13.4 0.3 1 21 563 583 563 584 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.0011	19.8	0.5	1	23	158	180	158	180	0.98
2	15	0.0001	0.007	17.3	2.0	2	23	185	206	184	206	0.96
3	15	6.6e-06	0.00044	21.1	3.2	1	23	212	234	212	234	0.97
4	15	9.4e-05	0.0063	17.5	0.7	1	23	239	263	239	263	0.95
5	15	3.3e-07	2.2e-05	25.2	1.1	1	23	269	291	269	291	0.98
6	15	1.2e-07	7.7e-06	26.6	0.4	1	23	297	319	297	319	0.98
7	15	2e-06	0.00014	22.7	2.0	1	23	325	347	325	347	0.98
8	15	0.00019	0.013	16.5	1.0	3	23	355	375	353	375	0.98
9	15	1.4e-05	0.00091	20.1	1.6	3	23	383	403	382	403	0.99
10	15	5.4e-05	0.0036	18.2	2.8	2	23	424	445	424	445	0.98
11	15	3.1e-05	0.0021	19.0	0.7	1	23	451	473	451	473	0.98
12	15	1.8e-05	0.0012	19.7	0.2	2	23	480	501	480	501	0.97
13	15	1.2e-06	8.1e-05	23.4	1.0	1	23	506	529	506	529	0.97
14	15	3.1e-05	0.0021	19.0	0.9	1	23	535	557	535	557	0.97
15	15	0.0019	0.13	13.4	0.3	1	21	563	583	563	584	0.95

Sequence Information

Coding Sequence: ATGTCTGGTTCTGTGTGTCGTGTTTGCCTCGGCGGGGGAAGGATGGAATTTGTTGACGATGAGATACTGCTGATGCTGTACGAGAAACTTACCAGTGCAAAGCTGAACACAGGTGACGGTCGTCCGAGCACATTATGCTACATTTGCTCATCTCAACTGCAGAGGTGTCGACGCTTCTCCGAGCTGGCTCACAGATCCGAGAAGTTCCTCAATGATCTGCTTATTCTTAATCAGAGAGTAACACACGAAGCTATTTCCATGCTTAAGATTGGACCCTCACACAATCTGTCCACTACAAACTTAGACAATATTAACTACGATGGCTACTCAGACACACAAATGCTTGAAGTCTCTGTTAAACAAGAGTCGAGCGACGACACAAAACTAGAAAGAAACTCCAACGATGACTTTGACAGCGAAGACTCATTACCTATTAAGAAAGAAGAAATATTCACAACAAACGAGTTATACTACAATTGTGATGAATGTCAAATTAAGTTCATATCTAAAAGACAGTTATCTGCGCACTTAAGAATACATAATTATGATACATATTGCAAGAAATGCAACAAGCTTTTCTCAAACACGAGCAGTTTAAAAGGTCATATGAGCATTCATACTGGAGAAAGACCGTTCGCTTGTCATATATGCAGTAGAACGTTCCGAAAAAAACCTTATTTAACCAGTCATATTCGTATGCACAAAGAAAAACCTTTCTTCTGCACTCTTAATAACTGCAACGCAGCGTTCGCTCACCCGGACAGCTTGAACAAGCATATGCAAATACACACACGTGAAAATCCGTTTGTCTGTAATCGTTGCAACAAAACCTTTGCTTACAAAAGCGCTTTGACCCGTCATGTTAGAATCCACACTGGTGTTAAGCCTTTTGTTTGTACGGAATGCGATATGACATTCGCTGTTCAAAGCAGCTTAACCAAGCACATGAGAATACATACTGGTGTTAAGCCGTATGCATGCGATAAATGTGATGCAGCTTTTAACCACGCAGGGAATCTTAAAAGGCATATGCATACACATAACGAGGAGAAACCGTTTGGTTGTGAGAGATGTGATAAAAGATTTTGTGATGAAGACGGTTTGAAGGAACATGCGAGGGTGCATACGGGGGAGAAACCGCACGGTTGCAGTAAGTGCGATATGAAATTTGCCTTCAGTAGTACGCTGACCAAGCATATGCAGACACATGAAGATAAACCTGTGCCTAAGGAACCTCCAAGCCAGCCTGCAAGGACTCGTGTTCGGCCTACATGCCAAGTTTGCAAAAAGCAGTTGACGTCGAACTCTCATCTCATCATCCACATGAGATCCCACACCGGGGAGCGGCCGTACCCTTGTAGTATCTGTAACCAGACCTTCCGGACTAAGACTATACTCAAAGGGCATATGCGCGTACACACAGGAGAAAAAGTAGCCTCATGTGAGATATGCGGCATGGCGTTCACACAGACCGGCAGCCTTGGCAAGCATATGAGGTTACATACAGGGGAGTTATATGCCTGTCATCTATGTGGGAAGGGATATAAACAGAGTGGACAACTTACTGCGCATATACGAAACTTCCATGAGGGGATTAAGAGGTTCTCCTGCGATATATGTAACGCTAGGTTCACAGCCCGTGGCCACCTCCGAAACCATATGAACGCCCACGCCGGCATCAAGCCATACGCCTGCCTCAAGTGTGGTAACAGGTTCGCAACCAGGACAGTGCTACGGCGGCATATCAAGAACTCCTGCAAATGA
Protein Sequence: MSGSVCRVCLGGGRMEFVDDEILLMLYEKLTSAKLNTGDGRPSTLCYICSSQLQRCRRFSELAHRSEKFLNDLLILNQRVTHEAISMLKIGPSHNLSTTNLDNINYDGYSDTQMLEVSVKQESSDDTKLERNSNDDFDSEDSLPIKKEEIFTTNELYYNCDECQIKFISKRQLSAHLRIHNYDTYCKKCNKLFSNTSSLKGHMSIHTGERPFACHICSRTFRKKPYLTSHIRMHKEKPFFCTLNNCNAAFAHPDSLNKHMQIHTRENPFVCNRCNKTFAYKSALTRHVRIHTGVKPFVCTECDMTFAVQSSLTKHMRIHTGVKPYACDKCDAAFNHAGNLKRHMHTHNEEKPFGCERCDKRFCDEDGLKEHARVHTGEKPHGCSKCDMKFAFSSTLTKHMQTHEDKPVPKEPPSQPARTRVRPTCQVCKKQLTSNSHLIIHMRSHTGERPYPCSICNQTFRTKTILKGHMRVHTGEKVASCEICGMAFTQTGSLGKHMRLHTGELYACHLCGKGYKQSGQLTAHIRNFHEGIKRFSCDICNARFTARGHLRNHMNAHAGIKPYACLKCGNRFATRTVLRRHIKNSCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01336120;
90% Identity: iTF_00662412;
80% Identity: -