Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751400.1:5660059-5662423[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00051 0.034 15.2 2.9 1 23 134 156 134 156 0.98

2 16 1.6e-06 0.00011 23.1 1.6 1 23 162 185 162 185 0.95

3 16 0.32 21 6.4 1.9 2 23 193 214 192 214 0.96

4 16 1.3e-05 0.00084 20.2 3.3 1 23 221 243 221 243 0.98

5 16 1.2e-05 0.00083 20.2 2.6 1 23 250 272 250 272 0.97

6 16 1.1e-07 7.1e-06 26.7 2.1 1 23 278 300 278 300 0.99

7 16 2.3e-05 0.0016 19.4 4.4 1 23 306 328 306 328 0.99

8 16 1.7e-06 0.00011 23.0 1.0 1 23 334 356 334 356 0.98

9 16 1.4e-05 0.00095 20.1 0.6 1 23 362 384 362 384 0.98

10 16 3.5e-06 0.00023 22.0 0.1 1 23 390 412 390 412 0.97

11 16 5.7e-07 3.9e-05 24.4 5.3 1 23 418 440 418 440 0.98

12 16 1.1e-07 7.2e-06 26.7 0.3 1 23 446 468 446 468 0.98

13 16 0.00016 0.011 16.7 2.4 1 23 474 496 474 496 0.97

14 16 4e-07 2.7e-05 24.9 0.6 1 23 502 525 502 525 0.97

15 16 1.4e-06 9.6e-05 23.2 1.4 1 23 531 553 531 553 0.98

16 16 0.0031 0.21 12.7 5.3 1 23 559 581 559 581 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00051	0.034	15.2	2.9	1	23	134	156	134	156	0.98
2	16	1.6e-06	0.00011	23.1	1.6	1	23	162	185	162	185	0.95
3	16	0.32	21	6.4	1.9	2	23	193	214	192	214	0.96
4	16	1.3e-05	0.00084	20.2	3.3	1	23	221	243	221	243	0.98
5	16	1.2e-05	0.00083	20.2	2.6	1	23	250	272	250	272	0.97
6	16	1.1e-07	7.1e-06	26.7	2.1	1	23	278	300	278	300	0.99
7	16	2.3e-05	0.0016	19.4	4.4	1	23	306	328	306	328	0.99
8	16	1.7e-06	0.00011	23.0	1.0	1	23	334	356	334	356	0.98
9	16	1.4e-05	0.00095	20.1	0.6	1	23	362	384	362	384	0.98
10	16	3.5e-06	0.00023	22.0	0.1	1	23	390	412	390	412	0.97
11	16	5.7e-07	3.9e-05	24.4	5.3	1	23	418	440	418	440	0.98
12	16	1.1e-07	7.2e-06	26.7	0.3	1	23	446	468	446	468	0.98
13	16	0.00016	0.011	16.7	2.4	1	23	474	496	474	496	0.97
14	16	4e-07	2.7e-05	24.9	0.6	1	23	502	525	502	525	0.97
15	16	1.4e-06	9.6e-05	23.2	1.4	1	23	531	553	531	553	0.98
16	16	0.0031	0.21	12.7	5.3	1	23	559	581	559	581	0.98

Sequence Information

Coding Sequence: ATGACGGTCACAACAGAGCGAGCCCTGACAGAGTTCTTTAAAAACCGCTTCGAGTTGAATGAAGAAACTTCCAGCTTGCTCAACGCGGAGACAAAACACAACTTCTCAATATCTATAGTTGAGCACACAGCTTGCGATGATTCCAGCGGATTAAGGACAGTGAAGGAGGAACCAGAGggcatttattttgattttgaagatgatgatgaaaaatctGTTAAAATTGAAGctaCATCTGTATCAAAAAATACTGGAGGCAATAAAACAAAGCAAATAAATGTAAGACATATCAAAACTGAGAGTGAAACCTTCAAATACAAAAGAGGAACTTGCAGAAATAATGGAAATAATACTGAAGAAAACGACAAAATGAAAAACCAAGATGATACAGATTTTAACTATTTTTGTCCGAAATGCAACAAAAGCCATGTCACCAGAAAAGCTTTAAATCAGCACATGAAAGTGCACGACCATAGCAGGCGCTATGTGTGTGAAATATGCAAATACAGATTCAACACTAAATCCAACTTAAAAAATCACCAAGACAATTTACATAGAACAGAAATCGAGACTGTTCAATGTACTGTCTGCCATAAACTCATGAACAGCGCACAGATCTTAAAACGACACATGAAAAGTCACTCAGATAAAGCAAAAACTTTCTCCTGCGATAAATGTGACCAAAAGTTCTCTTATAAAAGCACTTTAGTACGACATAGGACAACACACATAGATAATAATGCTAGGCACAGTTGTCCAATATGCAAGAAGACTTTCTCAGTGATTTATTACCTGAAAAGTCATATGAAACTTCACACTGGGACTAAACCCTATTCTTGCGAAAGATGCGGGAAGGCGTTCACTCTCAACAGTCATTTAACAATTCACATGAGAACGCACACCGGGGAGCGGCCGTATACGTGCAGTAAATGCGACAAAAAATTCTCCAGCTTAGCTCATATTAAATATCATATGAAAATGCACACAGGAGAGAAGGGTTACGCTTGCGATGTCTGCCAGAAAGCCTTCTCAGAAAGTAGCCACTGGAAAAGTCACATGAGAATTCATTCTGGTGAGAAACCCTATGCGTGCGATATGTGTGATAAAAAATTCATAGGTAACACCAACTTGAAGTTACATAAAAGAATTCACACAGGTGTCAAGCCGCATGTGTGTGATGTGTGCGGTAAAGCGTTCGCTCAAAAGTCCGTTTTGATAATACATGTTAGAAGTCATACAGGGGAGAAACCGTTCGCTTGTCATCGCTGCGGGAAAACTTTCAGCATGTCGGCGCATTTGAAAACTCACATGCGAACTCACACAGGTGAAAGGCCCTACGCGTGCGAAATATGCGGCAAAACGTTTGCGGAGAACGCCCGTCTTAAACGCCATATGCGAACGCACACTGGAGAGAAACCGTACGACTGTTCGATGTGCGACAAATCCTTCGCAGACTACACGAATTTGAAGTGTCATATGGTCACACATACAGGTGAGAAGCCTTACGCTTGTGACCGGTGCGGGAAAACATTTACACAGCAAGGCACAATGAAGAAACACATCCGTATAGTACATCTTAAAGAAAGGCCTTATGCCTGTGATATGTGCCCGAAGACTTACACCAAAAGCCATGctttaaaaatacatattagaaCACATACTGGAGAAAGACCATATAATTGTAGTAAATGCAGTAAAACGTTCACAAGCCATGAGATAATGAAGCGGCATTTGAAAACCCATGGTGATGGATATGACAAATGTGATGGGCCAGAAAGTGTAATGATGGATGGAGTCGAGGATCTTAAAATGAATTGA
Protein Sequence: MTVTTERALTEFFKNRFELNEETSSLLNAETKHNFSISIVEHTACDDSSGLRTVKEEPEGIYFDFEDDDEKSVKIEATSVSKNTGGNKTKQINVRHIKTESETFKYKRGTCRNNGNNTEENDKMKNQDDTDFNYFCPKCNKSHVTRKALNQHMKVHDHSRRYVCEICKYRFNTKSNLKNHQDNLHRTEIETVQCTVCHKLMNSAQILKRHMKSHSDKAKTFSCDKCDQKFSYKSTLVRHRTTHIDNNARHSCPICKKTFSVIYYLKSHMKLHTGTKPYSCERCGKAFTLNSHLTIHMRTHTGERPYTCSKCDKKFSSLAHIKYHMKMHTGEKGYACDVCQKAFSESSHWKSHMRIHSGEKPYACDMCDKKFIGNTNLKLHKRIHTGVKPHVCDVCGKAFAQKSVLIIHVRSHTGEKPFACHRCGKTFSMSAHLKTHMRTHTGERPYACEICGKTFAENARLKRHMRTHTGEKPYDCSMCDKSFADYTNLKCHMVTHTGEKPYACDRCGKTFTQQGTMKKHIRIVHLKERPYACDMCPKTYTKSHALKIHIRTHTGERPYNCSKCSKTFTSHEIMKRHLKTHGDGYDKCDGPESVMMDGVEDLKMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267397; iTF_00662411;
90% Identity: iTF_00662411;
80% Identity: -