Eram021868.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- slc12a9
- Assembly
- GCA_947578815.1
- Location
- OX388223.1:16557836-16583189[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00021 7.5 7.7 0.0 32 52 629 648 627 650 0.89 2 4 0.00021 7.5 7.7 0.0 32 52 711 730 709 732 0.89 3 4 0.00021 7.5 7.7 0.0 32 52 793 812 791 814 0.89 4 4 0.00029 10 7.3 0.1 32 52 875 894 873 896 0.84
Sequence Information
- Coding Sequence
- ATGATAAGCAGAACCCTTGGCCCGGAGTTCGGGGGCGCCATTGGCACATTATTCTTCTTCGCGAACGTGGTGTCTAGTGCTCTCTGCATTTCGGCGTGTACTGAGGCGTTGGTAGAGAACTTTGGACCTCATGGCTACCTGGTCAGCCACGGGCTGCCGGACGGCGGGTGGTACCGGTTCCTGTACCGCTCCCTGCTGAACGCGCTCGGGCTGTGCGTGTCCCTGGCGGGCGCGTCCCTGTTCGCGCGCACCAGCCTGGCCATCTTCCTCACCATGCTCGTGTGCCTCGGCAGCGCGCTGCTGAGCTTCTTCATCACCGCGCCGGGAGTGATCGCGCGGCCAGAAACCAACACGCTCACTAACGTGACAAACTTCACGTACACCGGGCTGTCCAGCGCCACCCTGGTGTCCAACCTGTACGCCGACTACGGGCGCGACTACTCGACTACGGGAGGCGAGTTGGTCGACTTCGCGTCCGTGTTCGGAGTGTTGTTTACGGGCGTCACTGGCGTCATGGCTGGAGCTAACATGAGCGGTGAGTTGAAGAACCCAGCCCGCAGCATCCCCCGCGGCACGCTGGGCGCGCTGCTGGTGACGGCGCTGTGCTACGGCACGCTGGCCGCGCTGTCGGCCGCCGCCTGCAGCCGCGACCTGCTGCAGAACAACTACGTCTACCTGCTGCCTATTAACGTGTGGCCGCCTTTTATTGCGACTGGAATGTTGATGGCGACCTTCTCTGCCGGGCTGTCCAACTTGATCGGAGCGTCCAGGGTGTTGGAGGCACTAGCCAAGGACAACATTTATGGCTTCCTCCTGCGGCCCATGGTGAGCAGGTCCGGCAACCCGGTGCTGGCCGTGCTCGCGTCCTGGCTGCTCGTGCAGCTCGGCGTCATCACGGGCTCGCTCAACACCATCGCGCAGATCAACTCGGTGCTGTTCCTGACCAGCTACTTCGCCATCAACCTGGCCTGTCTGGGGCTGGACTTGGCTGGGGCACCGAACTTCAGGCCATCATTCAAGCTGTTCTCCTGGCACACGTGCCTGATGGGCCTGCTGGGCTGCGCGGGCGTAATGTTCACGTTACGGCCCGCGCACGCTCTAGGCGCGGCCCTGGCGTGCGCGGCGCTAGTGCTGACATTACACGCGCTGTCCCCGGCCGCGGCCGCGCCCGCCTGGGGCAGCCTCAGCCAGGCGCTCATCTTCCACCAGGTCCGCAAGTACCTGCTGCTGCTGGACCCGCGGCGCGAGCACGTGAAGTTCTGGCGGCCGCAGATCCTGCTGCTGCTCGCCTCGCCGCGCCAGCAGGCGCCGCTCATCGACTTCGTCAATGACCAGAAGAAGGGAGGTTTGTTCGTCCTGGGGCACGTGAGGGTGGGCGAGCTGGACGGCAGCGGGGACCCGCTCGCCGAGGAACACACATACTGGCTCAAGCTCATCGACCATCTGAAGGTGAAAGCCTTCGTAGAGCTGTGTCTAGCGCCATCTGTGCGCAGCGGAGCCGCTCAGCTGACCCGCCTGGCAGGTCTCGGTGCCATGAAGCCTGACACCGTGCTCCTGGGCTTCCGCGACCAGGCGCCACCCAGGGACTTCTTTAGGGATCCAACCTCCCCATACAAAACGGAGCAATTCGACACGGAGACCGGCGACATGTTTCCCCTCCGAGGCGCGGACTGCAAACTCAGCGCTCCCGAGTATATACGCGTAGTCGCCGACGTGCTCAGCGTGAGGAAGAACGTCGGGCTGTGTAGGCACTTCCACAAGCTGGACATGGCCGCGGTTGAGCGGAAATCAGCGTCGCTGAAATACATCGACGTGTGGCTAGTCGAGCCGCTAGCGGCGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGGTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCAAGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCAAGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGAGGCCGGTGTAACAATACCAGTGGGCGACGACTCGTCGCTAGACCCGAGCATAGCCAACCTGGCCCCGGGCCGGCCTGTGCAGGAGCGGCTGCAGCATCTGCTGAGGCTGCTGCGCATCAACGCGACGGCGCACGTGGTGTCGGAGTGGCCGGCGCTGGAGGACACGGGCCACTGGATGTCCGACGCGTCCGACAGCTCCGTGTACCAGAGGGTGCCTTCTAGATACATGCACAAAGTGAACAGCATCATCAGGAGTCGGAGCGGCGGCGAGACGGCGGTCACCTTCTTGCAGCTGCCGGCGCCGCCGCGGCTGGCGGCCGAGCGACAAGAGGCTGACAAGGCCCTCTGTGAACAATACTTACAGGTGCTTGACGAATTCACGAAGGAGCTGTCCCCCACGATACTGGTGCGAGGCTTGAAACCTGTCACATCCACTGCTCTATGA
- Protein Sequence
- MISRTLGPEFGGAIGTLFFFANVVSSALCISACTEALVENFGPHGYLVSHGLPDGGWYRFLYRSLLNALGLCVSLAGASLFARTSLAIFLTMLVCLGSALLSFFITAPGVIARPETNTLTNVTNFTYTGLSSATLVSNLYADYGRDYSTTGGELVDFASVFGVLFTGVTGVMAGANMSGELKNPARSIPRGTLGALLVTALCYGTLAALSAAACSRDLLQNNYVYLLPINVWPPFIATGMLMATFSAGLSNLIGASRVLEALAKDNIYGFLLRPMVSRSGNPVLAVLASWLLVQLGVITGSLNTIAQINSVLFLTSYFAINLACLGLDLAGAPNFRPSFKLFSWHTCLMGLLGCAGVMFTLRPAHALGAALACAALVLTLHALSPAAAAPAWGSLSQALIFHQVRKYLLLLDPRREHVKFWRPQILLLLASPRQQAPLIDFVNDQKKGGLFVLGHVRVGELDGSGDPLAEEHTYWLKLIDHLKVKAFVELCLAPSVRSGAAQLTRLAGLGAMKPDTVLLGFRDQAPPRDFFRDPTSPYKTEQFDTETGDMFPLRGADCKLSAPEYIRVVADVLSVRKNVGLCRHFHKLDMAAVERKSASLKYIDVWLVEPLAAHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPSEAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSKRGWRHLQLRVFSKPEPVQGVLEAGVTIPVGDDSSLDPSIANLAPGRPVQERLQHLLRLLRINATAHVVSEWPALEDTGHWMSDASDSSVYQRVPSRYMHKVNSIIRSRSGGETAVTFLQLPAPPRLAAERQEADKALCEQYLQVLDEFTKELSPTILVRGLKPVTSTAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -