Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388217.1:4882679-4896113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00042 0.034 15.5 5.3 1 23 369 391 369 391 0.98

2 11 0.042 3.4 9.2 0.2 2 23 399 421 399 421 0.94

3 11 5 4.1e+02 2.7 1.5 1 23 425 447 425 447 0.93

4 11 0.0098 0.8 11.2 0.1 3 23 481 502 479 502 0.88

5 11 0.021 1.7 10.1 0.7 1 22 514 535 514 539 0.93

6 11 0.12 9.9 7.8 0.1 2 23 558 580 558 580 0.93

7 11 0.21 17 7.0 3.2 2 23 599 621 598 621 0.96

8 11 0.00038 0.031 15.7 0.5 2 23 635 656 635 656 0.97

9 11 0.12 10 7.7 0.0 2 23 662 683 661 683 0.91

10 11 1.5e-05 0.0012 20.1 2.0 1 23 689 711 689 711 0.98

11 11 7.6e-06 0.00061 21.0 1.3 1 23 717 740 717 740 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00042	0.034	15.5	5.3	1	23	369	391	369	391	0.98
2	11	0.042	3.4	9.2	0.2	2	23	399	421	399	421	0.94
3	11	5	4.1e+02	2.7	1.5	1	23	425	447	425	447	0.93
4	11	0.0098	0.8	11.2	0.1	3	23	481	502	479	502	0.88
5	11	0.021	1.7	10.1	0.7	1	22	514	535	514	539	0.93
6	11	0.12	9.9	7.8	0.1	2	23	558	580	558	580	0.93
7	11	0.21	17	7.0	3.2	2	23	599	621	598	621	0.96
8	11	0.00038	0.031	15.7	0.5	2	23	635	656	635	656	0.97
9	11	0.12	10	7.7	0.0	2	23	662	683	661	683	0.91
10	11	1.5e-05	0.0012	20.1	2.0	1	23	689	711	689	711	0.98
11	11	7.6e-06	0.00061	21.0	1.3	1	23	717	740	717	740	0.98

Sequence Information

Coding Sequence: ATGGTGGCGTACTGTTGTGTAAAAGGTTGCAATAACAACAGCAGCAATAAAAAGAAAGACCCTGATGATATGACATCGTTTCACGCCTTTCCGTCAAATGTAGAAATGAAACAAAAGTGGCTGAAAGCTATTGGGAGACCAGACTGGACACCGCCAAGCTATGCCCGCATATGTAGTGCACACTTCAGCTATGAACAGATTAACCATGACGGGAGGAGGATAAGGATTAAAGATGATGCAGTTCCTATAAAAGATTTGCCTGCCAACTCCAACTTCGAAGCATCAGATGTAGAGGTGTGTAGATTCTGCCTGGCTGCTGAGGTGCGCTTGCACAGCCTTCAGGATGGTGTTTACAAGGTGTACATGGAGTCCTTAGTGGGGTACAATGAAAACTACCATATAGAAGGTCTTCCACAGTTTGTTTGCTATGAGTGTGCAGCTCATCTCAAGAAATGTTACAAACTATTAGAAAGGAGTCTAACTGTGCAAGCCACATTACTCGATATTTTTGCACAATATGGCAAGATTACAATAAGTCTTATTAATGCAAAAAATCGAAAGCTGCTTAATTTGTCATCAACATTCACTACACATGAGATTAAGACAATTTATGAATTTAAATACAATGGCAGCTTGGAAAACAATGAACTTAATGTTATTGAAAATGACAATAAACAGAGAACTATGGACAATTACATTAGCATACCAAAACTAGAAGTAACAAGTTTAATTATTAATCCTGAAGCTATGAAAAATACTGAAAATTTTGAAGCAATGGATTTGCACAGTGATGAAGATATAGACTTTAAGGATTATGAGAGATTTGATATGTTTGATGATAGACTCAGCATTTCTGCAGATATCAGTTCAGAAGACGAAGTTACAGGCGAAACTGACAATGCTGTACTTAAGCAAGTAAGTTCTAGAGAGCAGGAAACTAAACCAAAAAAAGTGAAAAGGACAATCAAATCAAGTGATCATGCGGGACTGACTCCTGATGAAGTCAATATGCAGGAATATTTTAATGTTGTCCGATTAACGTTAGAACAACAAATAGAAGATTGGAACAAAACAAAAGAGAAGAAGGAATTTAGCGGAGAGTCATTCAAATGTCAAATATGTTCAAAAATGTTTGCTCACCATAATAGCTATAAAGTGCACATACAAAGTCACGATTCCAGTCGAGGGAGCGCGGAATGTCCTGTGTGCAAGCTGCGCTTTAAGAACGAGGTTCTGGCACGCTCACACGCTAACCGCGCGCATGCTAAGAAATTCCTTTGCAAGTTATGCATGAAGGCTTTCAACAATGTTGGTGTAGCAAAGAAGCACCACAAATGGCACACGGGCTACAAATACGCGTGCGGGTCCTGCGCGTTCACGTCCTTGCACGCGTCGGCGCTGGGCGCGCACACGCGCGCGCGGCACGGCGGCGCGCTCGCCTGCGTGCGCTGCGGCCGCGCCTTCCGAAGCGCGCGCGGGCTGCGCCTGCACAAGGCCGCTGCGCACGGAGAGGACAAGGATTCTGAAGACAATCCGAAGTACAGGTGTCAGCAATGCAATCTCAACTTCAAGTCCGAAGGTGCGAGGCGAGTCCATATTCTCACGTCCAAGCAACACAAGATAGAGACCAATCTGTGTGACGCGACACCACAAGACCAGAGACTCAAAAACACGTGTAAAAAGTGTGGTATAGAGTTCCCGGCATTCAAGGCACTCATAGAGCATGGCAGAGCGGAACACAGACGGATCAAGAAGAAGACTAGTTGGAGGCTGCCTGACGACTGTTATCCGACACAGTGTGACCATTGTGAGACAACAGTGGCGAATCGCTCAGAACACTGGCGGCACGTGCGCCGGCAACACCCCGCGCAACGCGCTGCTTACCGCCCCGTCATCACCGCCGTCTGCGATACTTGCGGAAAAGGCTTCCAGAATTCAACAAAGCTCCAGCTGCACGTCCTCCGGCACGGGCCTCCTCTTGTCCCCTGCGCGCGCTGCGCGCTCGTGTTCTACGACAAGTACGCGCTCGCGCGCCACGCCGCCGCGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCGCGCCTTCAAGCAGAAGTCGAACCTGGACCGCCATGAGAGAGTACACACTGGTGTAACCCCATACGAGTGCTCGATGTGCGGCAAAAAGTTCAAATACTCGACCAGCATGAACCTGCACGTGCGGACCGTGCATTACAAGCTGCCGCACCCTCCGAGAAAGAGAAAGAGTAAGAAATTGGATGAAAGTGATGTTAGTTTTAGGGAATAA
Protein Sequence: MVAYCCVKGCNNNSSNKKKDPDDMTSFHAFPSNVEMKQKWLKAIGRPDWTPPSYARICSAHFSYEQINHDGRRIRIKDDAVPIKDLPANSNFEASDVEVCRFCLAAEVRLHSLQDGVYKVYMESLVGYNENYHIEGLPQFVCYECAAHLKKCYKLLERSLTVQATLLDIFAQYGKITISLINAKNRKLLNLSSTFTTHEIKTIYEFKYNGSLENNELNVIENDNKQRTMDNYISIPKLEVTSLIINPEAMKNTENFEAMDLHSDEDIDFKDYERFDMFDDRLSISADISSEDEVTGETDNAVLKQVSSREQETKPKKVKRTIKSSDHAGLTPDEVNMQEYFNVVRLTLEQQIEDWNKTKEKKEFSGESFKCQICSKMFAHHNSYKVHIQSHDSSRGSAECPVCKLRFKNEVLARSHANRAHAKKFLCKLCMKAFNNVGVAKKHHKWHTGYKYACGSCAFTSLHASALGAHTRARHGGALACVRCGRAFRSARGLRLHKAAAHGEDKDSEDNPKYRCQQCNLNFKSEGARRVHILTSKQHKIETNLCDATPQDQRLKNTCKKCGIEFPAFKALIEHGRAEHRRIKKKTSWRLPDDCYPTQCDHCETTVANRSEHWRHVRRQHPAQRAAYRPVITAVCDTCGKGFQNSTKLQLHVLRHGPPLVPCARCALVFYDKYALARHAAAHAPARPHRCARCPRAFKQKSNLDRHERVHTGVTPYECSMCGKKFKYSTSMNLHVRTVHYKLPHPPRKRKSKKLDESDVSFRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00657268;
90% Identity: iTF_00656569;
80% Identity: iTF_00660377;