Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388225.1:3140995-3162325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.026 2.1 9.9 2.6 1 23 314 337 314 337 0.98

2 11 0.94 76 5.0 0.7 2 23 345 367 345 367 0.94

3 11 0.00022 0.018 16.4 2.6 2 23 399 421 399 421 0.96

4 11 0.0039 0.31 12.5 0.1 2 23 430 452 430 452 0.92

5 11 0.025 2.1 9.9 0.2 2 20 461 479 460 481 0.94

6 11 0.046 3.8 9.1 1.4 3 23 494 515 493 516 0.95

7 11 0.0014 0.11 13.9 0.5 1 23 520 543 520 543 0.96

8 11 0.0003 0.024 16.0 7.3 1 23 574 596 574 596 0.97

9 11 1.1e-06 8.5e-05 23.7 0.7 1 23 602 624 602 624 0.99

10 11 6.1e-05 0.005 18.2 1.3 1 23 630 653 630 653 0.96

11 11 8.6e-06 0.00069 20.8 0.4 2 23 661 683 660 683 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.026	2.1	9.9	2.6	1	23	314	337	314	337	0.98
2	11	0.94	76	5.0	0.7	2	23	345	367	345	367	0.94
3	11	0.00022	0.018	16.4	2.6	2	23	399	421	399	421	0.96
4	11	0.0039	0.31	12.5	0.1	2	23	430	452	430	452	0.92
5	11	0.025	2.1	9.9	0.2	2	20	461	479	460	481	0.94
6	11	0.046	3.8	9.1	1.4	3	23	494	515	493	516	0.95
7	11	0.0014	0.11	13.9	0.5	1	23	520	543	520	543	0.96
8	11	0.0003	0.024	16.0	7.3	1	23	574	596	574	596	0.97
9	11	1.1e-06	8.5e-05	23.7	0.7	1	23	602	624	602	624	0.99
10	11	6.1e-05	0.005	18.2	1.3	1	23	630	653	630	653	0.96
11	11	8.6e-06	0.00069	20.8	0.4	2	23	661	683	660	683	0.96

Sequence Information

Coding Sequence: ATGGATACAGTGAAAGTGGAGGACTCGGTAGATGTGCGAGCATGTCGTATTTGTCTCTCTTGGGACATGAAAATGTATCATATTCGGGAGTCTGGCCTGGACCAATTGTTTTCGGACCTTACGGGGACTTTGATGGCAGCATCAGACGGGTTGCCGCAGCACTTGTGCGGCTGGTGCAGAATAGTCCTGCTGAAGGCCCGGGACCTGCGCGCGCGCAGCCGCCGCGCCGACGCTCTGTTGCGACAGGCGCTTTTAAATCAGCAAGTTATAACAAACGCATACATCCGCAGTATCGATCGTTCAGCTCACAAACTGACACACGCACTCACACACAACTGCTTGAATACTAGCATTCAGTATTTCGAGCAAGACACACAGACAAACAAAGATCCAGGTAGTGAAATAATCAAAGATGAGGTAGAAACAGTTGAAAATGGAAGTAATGAAGATGGTGCAGATATATTACGAGTAAATGTAGTAGAAAATGAAATAAAAGCGTTTAACATTGACTGTGATGATATAGCTGACCACAGTGACGCTGACGACACTGATGAAGAAACTAAAATGAATCTGAAAGCATATAAATATAAGCTAGAAATGGATAATACAGAAGCCAAACCGACGCTAGCTGAAGTTAAGATAGTAGATACTAGTTTAGATAAGAAAATAAAGAGAATAGCTTCAAAGAAACGACTAAAAGAAGTCAATGTAGACACTTTACAAAGTAAAAAGCGTGATACGAAAGTAAAAGCTAGAAAAAAGAAAGAAAAGATAGATATTAAAGTTAAAGACAACTCTGAGCCAGGAAGATTTTTCACGATAGAGGAAATAGAAGAGTTTATAAAGAAATACAACTTTGAAATACAATATTTGACGGATGAAGAAATGGTGGAAGACATGGAACGGAGGAAGGTGTCCGACCGGTACAAACACTGCAAGTATAAGTGTAGCTTGTGCTATAAGGGATTTTTAACGTCTACAACATTCGACAATCATATGAAGAAGGATCATGATCCGCGTAACGCGAAAAACGAGTGTCGCTTGTGCCGCGTGAGCTACCGCTACGGTTTCTACCTGCGACAACACACACAGAACGCGCACCGCCTGCGGCTGCGCTGCGGAGAGTGCGCGGAGGCGGTGTGGGGCAGGAAGGAGTGTGTGGCGCACGCGGCGCGTCACGCGGGCACGACGCGGCAGTGCAAGTACTGCGGGAAGCACTTTCTTAAGAAATCATCATATACGTGGCACATGCGTGCCGCGCACCCCGTGGAGAACGCGGCGCGTGGCTCGTGCGAACTGTGCGGCGAGATATACACCAGCGCTAAAGGACTGCGCGCGCACAAGCTGCTGGCTCACAACAAGCGGTCATCGCCAGAGTTGCAGTGCGCGCGATGCCGTGCGCAGTTCGAGAATAAAGACGCGTTGCGCAAACACCAGGACCAGCAGGTGGACGACAGATGTGATCTCAGTTTAAGCGCGTGCGCGTCATGCGGCGCGTCGTGCGCGGGCTCTGAGGCGCTGCTGCGTCACATGCACACCGCGCATCACGTCGACATTTTTACCTGTGATCTTTGCAATAAATCCTTCCTCTCCAAGCCGTCGCTCTCGACGCACATAGACCGCGTGCACCTCGGCATCAGGCCGCTCCAGCATCATCAGCTGACGCAGTACAGGAAGCACAGCCAGCGACCCGTGCCCAGCAGGAAACGGGGCCACGACCATATGTGCGAGCACTGCGGGAAGGCTTATACGACACACCAGTTCCTGAAGAACCACCAGATGACCCACACGGGGGAGAGGCCCTTCAAGTGTGACCGTTGCCCTAAAGGCTTCACCACGGCTGTGCAACTCACGTGGCATACTCGGACGCACACTGGCGAGCGACCGTTCCAGTGCGACCAGTGCCACCAGGCCTTCAGCCTCGAGGGCAACCTGCGCAGGCACCGGAAGGCGGTGCACCTAGGGCTGCGGAAGAACGTGCCGTGCCCGCGCTGCGAGAAGACCTTCTCCACCAACTCGACCATGAAGCTGCACGTGAGGACCGTGCACGACGGCGCGCCCTGGCCGCGCCGCGAGCGCCGCAAGGAGCCCCGTCGGCCCTAG
Protein Sequence: MDTVKVEDSVDVRACRICLSWDMKMYHIRESGLDQLFSDLTGTLMAASDGLPQHLCGWCRIVLLKARDLRARSRRADALLRQALLNQQVITNAYIRSIDRSAHKLTHALTHNCLNTSIQYFEQDTQTNKDPGSEIIKDEVETVENGSNEDGADILRVNVVENEIKAFNIDCDDIADHSDADDTDEETKMNLKAYKYKLEMDNTEAKPTLAEVKIVDTSLDKKIKRIASKKRLKEVNVDTLQSKKRDTKVKARKKKEKIDIKVKDNSEPGRFFTIEEIEEFIKKYNFEIQYLTDEEMVEDMERRKVSDRYKHCKYKCSLCYKGFLTSTTFDNHMKKDHDPRNAKNECRLCRVSYRYGFYLRQHTQNAHRLRLRCGECAEAVWGRKECVAHAARHAGTTRQCKYCGKHFLKKSSYTWHMRAAHPVENAARGSCELCGEIYTSAKGLRAHKLLAHNKRSSPELQCARCRAQFENKDALRKHQDQQVDDRCDLSLSACASCGASCAGSEALLRHMHTAHHVDIFTCDLCNKSFLSKPSLSTHIDRVHLGIRPLQHHQLTQYRKHSQRPVPSRKRGHDHMCEHCGKAYTTHQFLKNHQMTHTGERPFKCDRCPKGFTTAVQLTWHTRTHTGERPFQCDQCHQAFSLEGNLRRHRKAVHLGLRKNVPCPRCEKTFSTNSTMKLHVRTVHDGAPWPRRERRKEPRRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00658863;
90% Identity: iTF_00656652;
80% Identity: -