Edem007786.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000125.1:50158-71313[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.031 3 9.9 2.6 1 23 319 342 319 342 0.98 2 11 1.1 1.1e+02 5.0 0.7 2 23 350 372 350 372 0.94 3 11 2.1 2.1e+02 4.1 2.3 2 10 404 412 404 412 0.94 4 11 4.8 4.7e+02 3.0 0.2 11 23 423 436 422 436 0.89 5 11 0.0046 0.45 12.5 0.1 2 23 445 467 445 467 0.92 6 11 0.046 4.5 9.4 0.2 2 20 476 494 475 496 0.93 7 11 0.027 2.7 10.1 1.4 3 23 509 530 507 531 0.95 8 11 0.0013 0.13 14.3 0.3 1 23 535 558 535 558 0.96 9 11 0.00036 0.035 16.0 7.3 1 23 589 611 589 611 0.97 10 11 0.00017 0.017 17.0 0.1 1 20 617 636 617 637 0.97 11 11 1.5e-06 0.00014 23.5 0.4 2 23 643 665 642 665 0.96
Sequence Information
- Coding Sequence
- ATGTCCTCAATAATAGTGAATATGGATACAGTGAAAGTGGAGGACTCGGTGGATGTGCGAGCATGTCGAATTTGTCTCGCATGGGACATGAGAATGTATCATATTCGGGAGTCAGGTCTGGAGCAAGTGTTTTTGGAGCTTACGGGGACTTTAATGACAGCATCAGACGGGTTACCGCAATACCTGTGCGGCTGGTGCAGAATACTCGTGCTGAAGACCCAGGacttgcgcgcgcgcagccgccgcgccgaaGCTCTGTTGCGACAGGCGCTTGTACATCAGCAAGTTATAACAAACGCATACATCCGCAGTATCGATCGTTCAGCTCACAAACtgacacacacactcacacacaactGCTTGAATACTAGCATtcaatattgcgaacaagacaCACAGACAAACAAAGAACCAGGTAGTGAAATCATCAAAGATGAGATAGAAACAGTTGAGAATGGAAGTAATGAAGATGGTGCAGAtatattacaagtaaatctagtAGAAAATGAAATAAAGGCGTTTAACATTGACTATGATGATATAGCGGACCATAGTGACGATACTGATGAAGAAACTAAAATGAATCTGAAAGCATATAAAGACAAGCTAGAAATGGATAATATAGAAGCCAAACCGACGCTAGCCGAAGTTAAGATGGTAGATACTAGTTTAGATAGAAAAATAAAGAGAATAGCTTCAAAGAAACGACTAAAAGAAGTCAATGTAGACACTTTACAGAGTAAAAAGCGTGATACCAAAGTGAAAActagaaaaaagaaagaaaagataGATATTAAAGTTAAAGACAACTCTGAGCCAGGAAGATTTTTCACGATAGAGGAAATAGAAGAGTTTATAAAGAAATACAACTTTGAAATACAATATTTGACGGATGAAGAAATGGCGGAAGAAATGGAACGGAGGAAGGTGTCGGACCGGTACAAACACTGCAAGTATAAGTGTAGCTTGTGCTATAAGGGATTTTTAACGTCTACAACATTCGACAATCATATGAAGAAGGATCATGATCCGCGTAACGCGAAAAACGAGTGTCGCTTGTGCCGCGTGAGCTACCGCTACGGTTTCTACCTGCGGCAACACACGCAGAACGCGCACCGCCTGCGGCTGCGCTGCGGGGAGTGTGCGGAGGCAGTGTGGGGCAGGAAGGAATGCGtggcgcacgcggcgcgccaCGCGGGCACGACGCGGCAGTGCAAGTACTGCGGGAAGCACTTTCTaataaatgttttgattatgATGTTGACCAGTAAGAAATCATCATATACGTGGCACATGCGCGCCGCGCACCCCGTGGAGAACGCGGCGCGCGGCTCGTGCGAGCTGTGTGGCGAGATATACACCAGCGCTAAAGGACTGCGCGCGCACAAGCTGCTGGCTCACAACAAGCGGTCGTCGCCAGAGTTGCAGTGCGCGCGATGCCGTGCGCAGTTCGAGAATAAAGACGCGTTGCGTAAACACCGGGAGCAGCAGGTGGACCACAAATGTGATCTCAGTTTAAGCGCGTGCGCGTCATGCGGCACGTCGTGCGCGGGCGCAGAGGCGCTGCTGCGGCACATGCACACCGCGCACCACGTCGACATTTTTACCTGTGATCTTTGCAACAAATCCTTCCTCTCCAAGCCATCGCTCGCGACGCACATAGACCGCGTCCACCTCGGCATCAGGCCGCTCCAGCATCATCAGCTCACGCAGTACAGGAAGCACAGCCAGCGACCAGTGCCCAGCAGGAAACGGGGGCACGACCACATGTGCGAGCACTGCGGGAAGGCTTATACGACACACCAGTTCTTGAAGAACCACCAGATGACGCACACGGGTGAGAGGCCCTTCAAGTGTGACCGGTGCCCTAAGGGCTTCACCACGGCTGTGCAACTCACGGTGCACCTAGGGCTGCGAAAGAACGTGCCGTGCCCGCGCTGCGAGAAGACCTTCTCCACCAACTCGACCCTGAAGCTGCACGTGCGGACCGTGCACGACGGGGCGCCCTGGCCGCGCCGCGAGCGCCGCAAGGAGCCCCGGCGGCCCTAG
- Protein Sequence
- MSSIIVNMDTVKVEDSVDVRACRICLAWDMRMYHIRESGLEQVFLELTGTLMTASDGLPQYLCGWCRILVLKTQDLRARSRRAEALLRQALVHQQVITNAYIRSIDRSAHKLTHTLTHNCLNTSIQYCEQDTQTNKEPGSEIIKDEIETVENGSNEDGADILQVNLVENEIKAFNIDYDDIADHSDDTDEETKMNLKAYKDKLEMDNIEAKPTLAEVKMVDTSLDRKIKRIASKKRLKEVNVDTLQSKKRDTKVKTRKKKEKIDIKVKDNSEPGRFFTIEEIEEFIKKYNFEIQYLTDEEMAEEMERRKVSDRYKHCKYKCSLCYKGFLTSTTFDNHMKKDHDPRNAKNECRLCRVSYRYGFYLRQHTQNAHRLRLRCGECAEAVWGRKECVAHAARHAGTTRQCKYCGKHFLINVLIMMLTSKKSSYTWHMRAAHPVENAARGSCELCGEIYTSAKGLRAHKLLAHNKRSSPELQCARCRAQFENKDALRKHREQQVDHKCDLSLSACASCGTSCAGAEALLRHMHTAHHVDIFTCDLCNKSFLSKPSLATHIDRVHLGIRPLQHHQLTQYRKHSQRPVPSRKRGHDHMCEHCGKAYTTHQFLKNHQMTHTGERPFKCDRCPKGFTTAVQLTVHLGLRKNVPCPRCEKTFSTNSTLKLHVRTVHDGAPWPRRERRKEPRRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657610; iTF_00656652; iTF_00660600;
- 90% Identity
- iTF_00656652;
- 80% Identity
- -