Eram017072.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388222.1:642713-646342[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8e-08 7.4e-05 23.3 0.0 2 40 17 55 16 60 0.89 2 3 0.028 26 5.6 0.0 1 21 487 507 487 508 0.94 3 3 6.5 6e+03 -2.0 0.0 3 19 708 724 706 725 0.84
Sequence Information
- Coding Sequence
- ATGGTGAGGAACTACATCCGAAAGACCGACCGGGGCATGACGTACTCCAGAGAGCAGCTCCGTGAGGCAGTAGACAAAGTGAGGTCGGGAGAGTTAAACGGATATGTGGCCTCGGTGAGGTACAGCATCCCCCGGACCACGCTGTACGATCACGTCATTGGGAGAAGTGGGAAATCAACCACCCTCGGAAAACCACCAGTTCTGTCAAATGAAGTCGAGAAGATCCTAGCAGAACACCTCAAGTCACTACACGATAATGGATTCAATTTAGGAAGGAAAGAAGTACTAGATCTTGTTGGATTATTCCTTAAAACAAACAATATGAAGAATCCGTTCAAATCGGGGAAACCTGGCGATTACTGGCTCATGGCCTTTTGCAAAAGACACGACTTTAATCCAAAACCGTTGCACAAAGAGTTCGGGGCGAAGGAGAAAGATGTTATAATAGTTAAGGAGTTCTATTCTTTGTTAGAAACGAGGATAAACGAGCTCGATTTAACTGATAAACCTGGACAGATGTGGCATATTGAAGAACACAGCTTTTATAAAGGCAAAAGAGTGGCGAGGGATGACAAACTGAGAGATATCACGTTTGTGACAGTCTGCAGCGCTGAAGGCAAAAAAGCGCCGCTTCTGACTGTCTTCAAAGGGGAAAAAAGCCACGATTGGATGCTGGGAAAACATATAAATGTTAGTCATAGCCGTGGCATGTGTGGAGAGGTGTTTAAGGACTACTTTAAAACAGTATTTCTTAATTACATTGACGATACTCGACCAAATCTGGTCATTTTAGAGGCACAGTCCTCCATCGTTGATATAGATCTCGTCGCTGAAGCTACGAAAGCTAAAGTCACCATGGTCAAATGCCCAAGGTATTTGGAAAGCTTAGATATCCCGATTGCTAAAACTTTCAAACAAAGAGTGCCCCCATCATTCAAAGGCTCGACTAAAGAGTTTTCTAACTTTATAGCTGATGTTTTTGACGGTATACAAGTCTCTGAAATAGAAGATGATTTTAAAAACGCCGGTGTCCATCCATTTGCAGCAGTCTCTGACAGTAAATTTGATGATAATCAATTAAGGGTGTACGAAGAATTTAAAGAGTTTAAGGAGAGGCATCTAGTTCTAAACAGTTCAGAGTTGAATGACACAGAAGAAGTGATGGTTAAGGAAGACATGGAGTTCCAAGAGAATTTCATGATGGAGTTGGATGAATGTTCAACGTCGATGTCTATGACCGATGACGTAGAATCGCCGAGCGCATGCAGCAGCCAGCTGTTAAGACATGCTTTAATCGCTGTCAAAAAAGGCCTCATGGAAGTTGATCCCAGTAGCTCATTAAATGATGGAATACATCAGAAACATCCAGAAGATTCTGGAACAGAGACAGACGCAAACACTGACGAAAACCGACTAGTTGCATGGGTCGTGGGTTTAAATAATGCTGGTTTTATGATAACTGAGGAAAACTTGGCCGAAGCAGTGCATGATCTGGAAGTTGAAAAAACATCTGTTCGTCATTCATACGAGAGCTTCTTGAACCGGCATCCAGAACTGAAGGACAAACTATCGCAAAGTCTGTCATCTGACAAAGTTACAGCAGCATCTCTCAGAGTCTGGCTTGTTTGCGTAAAGAAATATCTCAAAAAGAAAAGTTTACAAGATGTCCTAAAATGTCCTAGACGTATTTTCACCTTTGGAGAAGTTGGATTATGTCTTAAAACTGCAGACGAAGGGCTTCATGACAAAGACAAGGCTGAAGACGTAACAGTTTTGGCAACGGGATCAGCAGATGGAATCATGCAAGCTCCTTCTGTTATATTTCCGTTTAAACTTCCTAAGGGATTCGGTTCGTCTAGCTGGACAAAAGCAGAAATCCTTAACGATCATATAACTGACGTCTTCTGTCCCTGGCTGATAGAACAGAATGTTCTATTCCCAGTGATTTTGTTCATGGATCGGACGACTCACATAAACTTGTCTCTATCCGAATTCTTTAAATCAAAACAGATAATTCCCATAGCTTTGCTAAACACTGAAACACAGCCCATAGAACCAGTTTTTCGATCATTAAAACAAAGTTGGAAACATAACAATAGTGTTATGACCAAGCTAAAGAAAGAAGAATTAGCGAAGGAATTAGAAAGTTACGTAAATGGAGATTTCAGCATAGAAATCACTGATAGTTTCAAAGCTTGTGGCATATGTCCATTTAATCCCAACATCAGATACATTCATGAGCTAGACAGAAGGATTGAGAGACACAGACTAGACGATTCAAAGAACAATGATGATAAAAATGTTAATCTTCTAAAAGAAGTAGAGAAAAGGATAGCAAAGGATTTGCTAGAAGAATTCATGAAATCCGGCGATGTATGGAAAGGGGATCCTGTGCATTCCAGTCTGTTTGACTTCTGGAGGAGAATTCGTGAGGAATCTCGTGAAGCGGATACACAGGAGATAGAACATACCGTTAGAATTGATGGCGATGTTTTCGAGATCTACATTGAGGAGGAGGACGCGGCAGCGCAATTGCGTAATTTTTGA
- Protein Sequence
- MVRNYIRKTDRGMTYSREQLREAVDKVRSGELNGYVASVRYSIPRTTLYDHVIGRSGKSTTLGKPPVLSNEVEKILAEHLKSLHDNGFNLGRKEVLDLVGLFLKTNNMKNPFKSGKPGDYWLMAFCKRHDFNPKPLHKEFGAKEKDVIIVKEFYSLLETRINELDLTDKPGQMWHIEEHSFYKGKRVARDDKLRDITFVTVCSAEGKKAPLLTVFKGEKSHDWMLGKHINVSHSRGMCGEVFKDYFKTVFLNYIDDTRPNLVILEAQSSIVDIDLVAEATKAKVTMVKCPRYLESLDIPIAKTFKQRVPPSFKGSTKEFSNFIADVFDGIQVSEIEDDFKNAGVHPFAAVSDSKFDDNQLRVYEEFKEFKERHLVLNSSELNDTEEVMVKEDMEFQENFMMELDECSTSMSMTDDVESPSACSSQLLRHALIAVKKGLMEVDPSSSLNDGIHQKHPEDSGTETDANTDENRLVAWVVGLNNAGFMITEENLAEAVHDLEVEKTSVRHSYESFLNRHPELKDKLSQSLSSDKVTAASLRVWLVCVKKYLKKKSLQDVLKCPRRIFTFGEVGLCLKTADEGLHDKDKAEDVTVLATGSADGIMQAPSVIFPFKLPKGFGSSSWTKAEILNDHITDVFCPWLIEQNVLFPVILFMDRTTHINLSLSEFFKSKQIIPIALLNTETQPIEPVFRSLKQSWKHNNSVMTKLKKEELAKELESYVNGDFSIEITDSFKACGICPFNPNIRYIHELDRRIERHRLDDSKNNDDKNVNLLKEVEKRIAKDLLEEFMKSGDVWKGDPVHSSLFDFWRRIREESREADTQEIEHTVRIDGDVFEIYIEEEDAAAQLRNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658319;
- 90% Identity
- iTF_00656062;
- 80% Identity
- -