Edem040009.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000920.1:178473-181610[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 8e-05 23.8 0.0 2 41 17 56 16 60 0.89 2 2 1.3 9.1e+02 1.2 0.0 1 11 487 497 487 510 0.78
Sequence Information
- Coding Sequence
- ATGGTGAGGAACTACATCCGAAAGACCGACCGGGGCATGACGTACTCCAGAGAGCAGCTCCGTGAGGCAGTAGACAAAGTGAGGTCTGGAGAATTAAACGGATATGAGGCCTCGGTGAGGTACAGAATCCCCCGGACCACGCTGTACGATCACGTCATTGGGAGAAGTGGGAAGTCAAACACCCTCGGAAAACCACCAGTTCTGTCAAATGAAGTCGAGAAGATCCTAGCAGAACACCTCAAGTCGCTACACGATAATGGATTCAATTTAGGCAGGAAAGAAGTTCTAGATCTGGTTGGATTATTCCTTAACACAAACAATATGAAGAATCCGTTCAAATCGGGGAAACCTGGCGATTACTGGCTCATGGCTTTTTGCAAAAGACACGACTTTAATCCAAAACCGTTGCACAAAGAGTTCGGGGCGAAGGAGAAAGATGTTATAATAGTTAAGGAGTTCTATTCTTTGTTAGAAACGAGGATAAACGAGCTCAATTTAACTGATAAACCTGGACAGATGTGGCATGTTGAAGAACACAGCTTCTATAAAGGCAAAAGAGTGGCGAGGGATGACAAACTGAGAGATATAACGTTTGTCACAGTCTGCAGCGCTGAAGGCAAAAAAGCGCCGCTTTTGACTGTCTTCAAAGGGGACAAAAGCCATGATTGGATGCTGGGAAAACATATAAATGTTAGTCATAGCTGTGGTATGTGTGGAGAGGTGTTTAAGGACTATTTCAAAACAGTATTTCTAAATTACATTGACGATACTCGACCAAATCTGGTTATTTTAGAGGCACAGTCCTCCCTCGTTGATTTAGATCTCGTCGCTGAAGCTACGAAAGCTAAAGTTACCATGGTCAAATGTCCAAGGTATTTGGAAGGCTTAGATATCCCGATTGCTAAAACTTTCAAACTTAGAGTGCCCACATCATTCAAAGGCTCGACTAAAGAGTTTTCCAACTTTATTGCTGATGTTTTTGACGGTATACAAGTCTCTGAAATAGAAGATGATTTTAAAAACGCCGGTGTCCATCCATTTGCAGCAGTCTCTGACAGTAAATTTGATGATAATCAATTAAGGGTGTACGAAGAATATAAAGAGTATAAGGAGAGGCATCTAGAGCGTTCAGAGTTGAATGACACAGAAGAAGTAATGGTTAAAGAAGACATGGACTTCCAAGAGAATTTCGTGATGGAAATAGATGAATGTTCAACGTCGATGTCtatgACCGATGACGGCGACTCGCCGAGCGCATGCAGCAGCCAGCTATTAAGACACGCTTTAATCGCTGTCAAAAAAGGCCTCACTATCATGGAAGCTGATCCTAGTAGCTCATTAAATGATGGAATACATCAGAAATATCCAGACGATTCTGGAACAGAGACAGACGCAAACACTGACGAAAGCAGACTAGTTGCATGGGTCATGGGTTTAAATAATGCTGGGTTCATGATAACGGAGGAAAACTTAGCTGAAGCCGTGCATGATCTAGAAGTCGCTCCGTTTGAAAAAACATCTGTTCGTCATTCATACGAGAGCTTCTTGAGCCGGCATCCGGAACTGAAGGATAGACTATCGCAAAATCTGTCCGCTGACAAAGTTACAGCAGCATCACTCAGAGTCTGGCTTGTTTGCGTAAAGAAATATCTCAAAAAGAAAAGTTTACAAGATCTCCTAAAATTTCCTAGACGTATTTTCACCTTTGGAGAAGCAGGATTCTGTCTTAAAACTGAAGACGAACGGCTTCATGAAAAAGACAAGGCTGATGACGTAACAGTCTTAGCAACCGGATCGGCAGATGGAATCATGCAAACTCCTTCTGTTATATTTCCGTTTAAACTTCCTAATGGCTTCGGTTCGTCAAGTTGGACAAAAGCAGAAATCCTTAACGATCATATAACTGACGTCTTCTGTCCGTGGCTGATAGAACACAATGTCCAATTCCCAGTGATTTTATTCATGGATCGTACGACTCACATAAACTTGTCTCTATCAGAATTCTTTAAATCAAAACAGATAATTCCCATTGCTTTGCTAAACACCGAAATACAGCCTATAGAACCAGTTTTTCGATCACTAAAAAAAAGTTGGAAACATAACAATAGTGCTATGACAAAGCTAAAGAAAGAAGAATTAGCGAAGGAATTAGAAAGTTACGTAAATGGAGATTTCAGCATAGAAATCACAGATAGTTTCAAAGCTTGTGGCATATGTCCATTCAACCCCAACATCAGATACATTCATGAGCTAGACAGAAGGATTGAGAGACAAAGAATGGACGATTCGAAGAACAATGATGATACGAATGTTAATCTTCTAAAAGAAGtagagaaaaggatagcaaagGATTTGCTAGAAGAATTCATGAAATCCGGCGATGTATGGAAAGGGGACCCCGTGCATTCCAGTCTATTTGACTTCTGGAGGGGAATTCGTGAGGATTCTCGTAAAGCGGATACACAGGAGATAGAACATACCGTTAGAATTGATGGCGATGTTTTCGAGATCTATGTTGAGGGAGAGGACGCGGCAGAGCAATTGCGTAATTTTTGA
- Protein Sequence
- MVRNYIRKTDRGMTYSREQLREAVDKVRSGELNGYEASVRYRIPRTTLYDHVIGRSGKSNTLGKPPVLSNEVEKILAEHLKSLHDNGFNLGRKEVLDLVGLFLNTNNMKNPFKSGKPGDYWLMAFCKRHDFNPKPLHKEFGAKEKDVIIVKEFYSLLETRINELNLTDKPGQMWHVEEHSFYKGKRVARDDKLRDITFVTVCSAEGKKAPLLTVFKGDKSHDWMLGKHINVSHSCGMCGEVFKDYFKTVFLNYIDDTRPNLVILEAQSSLVDLDLVAEATKAKVTMVKCPRYLEGLDIPIAKTFKLRVPTSFKGSTKEFSNFIADVFDGIQVSEIEDDFKNAGVHPFAAVSDSKFDDNQLRVYEEYKEYKERHLERSELNDTEEVMVKEDMDFQENFVMEIDECSTSMSMTDDGDSPSACSSQLLRHALIAVKKGLTIMEADPSSSLNDGIHQKYPDDSGTETDANTDESRLVAWVMGLNNAGFMITEENLAEAVHDLEVAPFEKTSVRHSYESFLSRHPELKDRLSQNLSADKVTAASLRVWLVCVKKYLKKKSLQDLLKFPRRIFTFGEAGFCLKTEDERLHEKDKADDVTVLATGSADGIMQTPSVIFPFKLPNGFGSSSWTKAEILNDHITDVFCPWLIEHNVQFPVILFMDRTTHINLSLSEFFKSKQIIPIALLNTEIQPIEPVFRSLKKSWKHNNSAMTKLKKEELAKELESYVNGDFSIEITDSFKACGICPFNPNIRYIHELDRRIERQRMDDSKNNDDTNVNLLKEVEKRIAKDLLEEFMKSGDVWKGDPVHSSLFDFWRGIREDSRKADTQEIEHTVRIDGDVFEIYVEGEDAAEQLRNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657127; iTF_00656062; iTF_00660244;
- 90% Identity
- iTF_00656062;
- 80% Identity
- -