Enis005163.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000022.1:1675618-1701262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.6 3.8e+02 2.3 0.3 2 11 266 275 266 287 0.81 2 13 0.036 2.5 9.2 0.7 5 23 295 315 293 315 0.90 3 13 6.1 4.2e+02 2.2 0.2 8 23 325 342 324 342 0.85 4 13 6.1 4.2e+02 2.2 0.2 8 23 352 369 351 369 0.85 5 13 0.00088 0.06 14.3 1.2 2 23 464 486 463 486 0.94 6 13 0.00088 0.06 14.3 0.1 1 23 492 514 492 514 0.97 7 13 0.022 1.5 9.9 0.2 1 23 522 545 522 545 0.88 8 13 5.3e-06 0.00036 21.3 2.3 1 23 550 572 550 572 0.98 9 13 1.2e-05 0.00082 20.2 0.8 1 23 578 600 578 600 0.96 10 13 0.00026 0.018 16.0 4.2 1 23 606 628 606 628 0.97 11 13 1.5e-07 1e-05 26.2 1.1 1 23 634 656 634 656 0.98 12 13 0.0013 0.086 13.8 4.3 1 23 662 684 662 684 0.98 13 13 2.1 1.4e+02 3.7 1.0 1 9 692 700 692 700 0.88
Sequence Information
- Coding Sequence
- ATGGAAGTCTTTCTGTATAATTCTACCGTTTGTAGATTATGCGGAGAAGAAAATGACAACGGAACATTGTTATATTCTTCTGAGGAAAATAGTCAGAACTTAAGTGAAATTATTAATTCATATTTACCAATCAAGGTATCGGATGATGGGCAATTACCGCGAACAATTTGTCCTGGGTGCACTATACAGATAGAAGCGACAGTGGAATTTATAACCTTAATTATAAATGGACAGAAAATAATTAGAGAGCTACATCAAAGAGAGAAGGAATATAAGAAGACATTGTTGACCAATGCCACAGCTAGTGAGCCGGAGATTATCACTGAGAAGATTGTATACGAGATTAACACTGGCGATGGAGTATACCAAGTGGAGCACCCAATCGCCTTGCAAGTGGCCGGCTTGGAGAAACCCAAACGCAAACGCGGCCGGCCTCCGAAGAAGTCCAAGAGTCCCGAAGAACTGGCACAGGAGGCCGCCGCGAGACAGCAGGTCCAGGAGGCCAAGACCACCCAGAAAGAAAGAGAGGACGTGCCTGGAAAACGCAGAAGAAAAACACCCACGAGGTTTAAGGAAGCAGTTCAGGGGAAGGAGCTAGAGCGGATATTCAAAGAAGAAGGCGTGACAGACGGCGACGAGAGCGACAACGAGGCGAAGCCGGACTCTGGCGATAAGCCGCCCGTGTCTAAAGAGCCCGAGGTCATCGGGCACATGGAGGCCTCGGGGGAGCTCGTTGTTGTGGTCAAGGGCAAGGGCCGGGGGAGGCCGAAAGGCCGCATGCGACCAACGCGCGAACAGTGCGCGATCTGCGGCATGGAGTTCTCGTGCGTCGGGCGCTACATGTCGCACGTGGCGGCTCACGGGCCCGTGCAGTACCGCTGCGGCTGCGGACAGACCTTCCCCACGCGGCTGACCTTCACCACGCACCAGCGCATCGCCAGGCACGAGGGCCAGACCGTGCTGCCCGCCAACCAGACCTTCCCCACGCGGCTGACCTTCACCGCGCACCAGCGCATCGCCAGGCACGAGGGCCAGACCGTGCTGCCCGCCAACCAGACCTTCCCCACGCGGCTGACCTTCACCGCGCACCAGCGCATCGCTAGGCACGAGGGCCAGACCGTGCTGCCCGCCGACCAGAAAACACAAAAATCCATAACGCCACCAATTAAAACGGAAACTCCACCAGAGCAAGAGCAATCCGAAGAACTACCATCAGTAGAGAAGTTAGTCAGCAACGTTCAGGACGCCACACTGCCGGCCGCCGTGCCGGACGCCGAGCAAGACGCCGGACAGCCGGAGGATAAACCAGAAATACTAGCAGAAACGCCAGCGGAGGCTGAAACGGAACCGGAAACTGTCGTACTTGGCCCCTCGGGGAAGCCGAAGATGAAATGTTCGCAGTGCGACAAAATGTTCAGCAATAAGCAAAGCCGCTCGCTTCACATTAAGGCAGTCCACGAGGGCTCCCGGCCATACTCGTGCGCGGAGTGCGGCGCGTCGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGCACTCGCACCGGCGCGCGCAGCCGCGCGGGTTCGCCTGCGACCTGTGCGGGAAGGTCCTAAACCACCCGTCATCAGTCGTGTACCACAAGGAGGCCGAGCACGCGGGCCAGCGCTACGTGTGCGGGAAGTGCGGGAAGCTGTTCAAGCACAAGCAGCTGCTGCAGCGACACCAGCTCGTGCACTCGCAGGCGCGGCCTTACAGCTGCAAGATTTGCAGCACAACGTTCAAGACGAAGGCGAACCTGCTGAACCACGCGTTACTCCACTCGGGCGTGAAGCGGTTTGCTTGCGAACTGTGCAAACACCGCTTCGCGCACAAAACCAGCCTCACCCTGCACATGCGGTGGCACTCTGGTCTAAAACCCTTCACCTGCAAAACGTGCGGCAAAAGCTTCAGCCAGAAAGGCAACCTGTCAGAACACGAGCGCATTCACACCGGCGAGAAGCCGTACCAGTGCTCCCAGTGTCCCCGCCGCTTCACGACGAGCAGTCAGCACCGACTACACGCGAGGAGGCACCAGGCGGACACCGAGCGGCCACACGTCTGCAATCACTGCGGGAAACGGTAA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSSEENSQNLSEIINSYLPIKVSDDGQLPRTICPGCTIQIEATVEFITLIINGQKIIRELHQREKEYKKTLLTNATASEPEIITEKIVYEINTGDGVYQVEHPIALQVAGLEKPKRKRGRPPKKSKSPEELAQEAAARQQVQEAKTTQKEREDVPGKRRRKTPTRFKEAVQGKELERIFKEEGVTDGDESDNEAKPDSGDKPPVSKEPEVIGHMEASGELVVVVKGKGRGRPKGRMRPTREQCAICGMEFSCVGRYMSHVAAHGPVQYRCGCGQTFPTRLTFTTHQRIARHEGQTVLPANQTFPTRLTFTAHQRIARHEGQTVLPANQTFPTRLTFTAHQRIARHEGQTVLPADQKTQKSITPPIKTETPPEQEQSEELPSVEKLVSNVQDATLPAAVPDAEQDAGQPEDKPEILAETPAEAETEPETVVLGPSGKPKMKCSQCDKMFSNKQSRSLHIKAVHEGSRPYSCAECGASFAYPRSLALHAHSHRRAQPRGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCGKCGKLFKHKQLLQRHQLVHSQARPYSCKICSTTFKTKANLLNHALLHSGVKRFACELCKHRFAHKTSLTLHMRWHSGLKPFTCKTCGKSFSQKGNLSEHERIHTGEKPYQCSQCPRRFTTSSQHRLHARRHQADTERPHVCNHCGKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657524;
- 90% Identity
- -
- 80% Identity
- -