Enis002878.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- MBD3
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000011.1:3067687-3076651[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-27 4.7e-24 84.3 0.1 1 72 5 71 5 75 0.95 2 3 0.0014 4.5 7.4 0.0 29 73 93 145 79 148 0.84 3 3 1.7 5.2e+03 -2.4 0.1 7 23 295 311 292 315 0.81
Sequence Information
- Coding Sequence
- ATGAATATTTCAATCGAAAAGAAACGTTCAGAGTGTCCTGCACTGCCTAAAGGCTGGCAAAGAGAAGAAGTTCTTAGAAAAACTGGGTTATCGGCAGGGAAGGTTGATGTTTATTACTATAGCCCAACAGGTAAAAAGTTTCGCAGTAAGCCTGAGCTAGTGCGTTATCTGGGTGATAGTATGGACCTATCGTGTTTCGACTTCCATCAGGGTCAGATAAACACAATGTTGCTGTGCAAGGCCAAGAAAGCGCGAGCGCAGTTTGATTACAGAGGTGTTCGTTCAGACGCATCGCTGGTGCCGCCAATCCGACAAACGGCTTCGATATTCAAACAACCGGTGACGGTGTATAAGACTCAGGAGAGTATGGTGAAGACGGATCTGAAGCACGGCACCACGGAGAAACCCAAGCAGCTGTTCTGGGAGAAGAGGTTGGAGGGTTTAACCGCCTGCGACGCCAACGGAGTGATCGGCACGACGTCGCTGCCCAAGTACATCAAGCCCCTAGGCCCGTACAATTCGGACGCCACCACAATCCAGTCGCTCGCCACTGCGCTGCACGTTTCATCGCAGTCCATTACTGGCCAGACCGGTTCCAAACACGCGATTCTGGAGAATCCGGGCGTTTTTTTAAACCCTGAGCAGCCGCTGATCGCGGCCGTGACCATTAGCAAGGAGGACGTGCGCCGCCAGGAGGACCGCGTGAAGCGAGCGCGCGCGCGTTTGCAGGTGGGTTCACAACGATACCTGCGCAAGTGGTGGGTGCGAGGCGCTAGCGGCGGCGTAGCGCGGCGCCGGCGCGGCCGCGCCCGCGCCCCCCGCAGCCCCCGGCCCGGCCTCGCCCGCCGCCGCGGCGCCCGACCAGTCGCACCACGCCGCGCCCGCCTCCAGCCCGCACCACCCGGAGGCCGGCGTGCACTCTACCACCGACTAGGCATGCCCCGCCCGCGCCCCCCGCAGCCCCCGGCCCGGCCTCGCCCGCCGCCGCGGCGCCCGACCAGTCGCACCACGCCGCGCCCGCCTCCAGCCCGCACCACCCGGAGGCCGGCGTGCACTCTACCACCGACTAGGCATGCCCCGCCCGCGCCCCCCGCAGCCCCCGGCCCGGCCTCGCCCGCCGCCGCGGCGCCCGACCAGTCGCACCACGCCGCGCCCGCCTCCAGCCCGCACCACCCGGAGGCCGGCGTGCACTCTACCACCGACTAG
- Protein Sequence
- MNISIEKKRSECPALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSMDLSCFDFHQGQINTMLLCKAKKARAQFDYRGVRSDASLVPPIRQTASIFKQPVTVYKTQESMVKTDLKHGTTEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKPLGPYNSDATTIQSLATALHVSSQSITGQTGSKHAILENPGVFLNPEQPLIAAVTISKEDVRRQEDRVKRARARLQVGSQRYLRKWWVRGASGGVARRRRGRARAPRSPRPGLARRRGARPVAPRRARLQPAPPGGRRALYHRLGMPRPRPPQPPARPRPPPRRPTSRTTPRPPPARTTRRPACTLPPTRHAPPAPPAAPGPASPAAAAPDQSHHAAPASSPHHPEAGVHSTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -